Swingsia samuiensis: E3D00_00280
Help
Entry
E3D00_00280 CDS
T06080
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ssam
Swingsia samuiensis
Pathway
ssam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E3D00_00280 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssam03400
]
E3D00_00280 (mfd)
Enzymes [BR:
ssam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E3D00_00280 (mfd)
DNA repair and recombination proteins [BR:
ssam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E3D00_00280 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_16
UB2H
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QDH16177
UniProt:
A0A4Y6UIH8
LinkDB
All DBs
Position
complement(58054..61542)
Genome browser
AA seq
1162 aa
AA seq
DB search
MAQSEAVTSEVTTTSFGPTIWGVPDGSVAFLLRQRLAEHEGPLLHVARDDAAVAALADML
AYLMPEVEVLRLPAWDCLPYDRVSPNPALVAERVGTLCRLLEPTKARRIVLTTIHSLIQR
VPPRSSFKGQSLSVASGETLDQSMLIELLIDNGYTRTDTVMEPGEFATRGGIFDLFPSGA
SDPVRLDLFGDEVENIRSFDVGTQRSTEKLARFDLRPVSEYSLNAASISRFRTGWRDTFG
SAATEDLIYENVSHGRRYPGLEHYLPLFHDGDGEQMETLLDYMPGVAMSFDQHAPDILKA
RLEMIKDHYEARRVPVREGEMPYRALPPHRLYLDQHGWDSMLAKVPSVVLNTFAKPDIGD
GIDAGNRPGQLFARARDGSREGIFEAFGKQAEEWAKSGRRTYVTAWSRGSRERIAHLLKE
HGVAAESYDSWPKAASVSRGTVGLLVLGLERGFITDRLSFVSEQDLLGERISRPPRRKKR
GEQFISQIGEIAEGDLVVHQEYGIGRYNGLETITEGRVAHDYLSIMYDDAQRLLLPVENI
DLLSRFGSEQTGVQLDKLGGTAWQARKAKMKSRIRIMAGELIRTAAARALKEAPTLAPAE
GAWDEFCARFPFVETEDQTRAIADVLEDMSAGRPMDRLVCGDVGFGKTEVALRAAFVAAM
SGMQVAVVVPTTLLARQHYRSFSTRFEGLPVKIAQLSRLVTAKEASKVREELSEGKLDIV
VGTHALLAKTVSFNRLGLLIIDEEQHFGVGHKEKLKSLREDVHVLTLSATPLPRTLQLSL
SGVREMSLIATPPTDRLAVRTFITPFDSVMIREAIQRERFRGGQIFCVVARLADMERMSE
RLIDIVPDAKIAQAHGRLTPTELERVMTEFADGKYDILLSTNIVESGLDMPSVNTIIIHR
ADMFGLGQLYQLRGRVGRGKQRGYAYLTWPQTKPLSASSQKRLEVMQTLDSLGAGFTLAS
HDLDLRGAGNLLGDEQSGHIKEVGIELYQQMLEDAVAGLRQERGRKEEDDKDWTPHIILG
LPVLIPEKYVPDLPVRLGLYRRIASLNGEQEVEAMRAELVDRFGSLPPEVANLLDVVLIK
KMCREAGVERLEAGPKGMVIQFRKNRFKNPAGLLDWATRKQDSGVKIRPDHKLALIREMT
NATRINFAKKVTNVLCKLARKV
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaagcgaagctgtcacgagtgaagtaaccacaacatctttcggccctacaata
tggggtgttccagatggaagtgttgctttccttttaaggcaaagactggcggagcatgaa
ggccctttattgcatgttgcgcgagatgatgctgccgttgcagctttagcagatatgtta
gcctatttaatgccagaagtagaggtattgcgcttaccggcttgggactgcctgccttat
gaccgtgtttcgcctaatcctgctttggttgcagaacgtgttggaaccttatgtcgttta
ttggagccaacaaaagcacgacgtattgttttaaccaccattcatagtcttattcaaaga
gtgccaccgcgctcatcatttaaagggcaatccctgagtgttgcgagtggagagacgttg
gatcagtccatgctgatcgaattgttgattgataatggatatacgcgaacagacaccgtg
atggagccgggagagtttgcaacgcgcggtggtatttttgatctttttccatctggcgcc
tctgatcctgttcggttggatctctttggtgatgaagttgaaaatatccgttcatttgat
gttggaacccaaaggtcgacagaaaaattagcgcgttttgatttgcgccctgtttcagaa
tattccttaaacgccgccagtatcagccgctttagaacaggttggcgggatacatttggt
tctgcagcaacagaagatttgatttatgaaaatgtatctcatgggcgtcgttacccgggc
ttagagcactatttgccattgtttcatgatggcgatggtgagcaaatggaaacattgctg
gattatatgcccggcgttgcgatgagttttgatcagcacgctcctgatattttaaaagcg
cgcttggaaatgattaaagatcattatgaagcgcgtcgtgtccctgtacgtgaaggagaa
atgccttaccgtgctttgccaccacatcgtttgtatctggatcagcatggctgggattcc
atgctcgcgaaagtgccttcagttgtattaaacacgtttgcaaaaccagatattggtgat
gggattgatgctggaaatcggccgggccaattattcgctcgtgctcgagatggatcgcgc
gagggtatatttgaagcttttggcaaacaggctgaagagtgggcgaaatctggccggcgg
acgtatgttaccgcgtggagccgtggttcacgggaaagaatagctcatttacttaaagaa
cacggcgttgctgcggagagttatgatagctggcctaaagctgcgagtgtttctcgtgga
acggtagggcttttggttctgggtttagagcgtggctttataacggatcgattaagcttt
gtttcagagcaagatcttttaggggagcgtatttctcggccgccgcgccgtaaaaagcgc
ggtgaacaattcatttcccaaattggcgagatcgcagaaggggatctggttgttcatcag
gagtatgggattggccgatataatgggcttgaaactataacggaaggtcgagtggcgcat
gattatctgtcgatcatgtatgatgatgctcagaggctcttattaccggtagaaaatata
gatcttttgagccgttttggttcagagcagacaggcgttcagctcgataagctgggtgga
acggcttggcaggctcgaaaagctaaaatgaagtcccgcatccggattatggcgggagag
ttaatccggactgctgctgctcgagctttaaaagaagcaccgacgcttgctcccgcagaa
ggggcttgggatgaattttgtgcacgctttccctttgttgaaacggaagatcaaacgcgt
gcaattgcggatgttttagaagatatgagcgcaggccgtccaatggataggcttgtatgt
ggagatgtgggttttggaaagacagaggttgcattaagggctgcgtttgttgcggctatg
tcggggatgcaggtagctgttgtagtgcctacaaccttattagctcggcagcattaccgg
agtttttctacgcggtttgaagggttgcctgtaaaaattgctcagctttctcgattagtt
accgcaaaagaagcctctaaagtgcgggaagaactttcggaaggtaagctggatattgtt
gttgggacacacgcacttttagccaagacggtttcttttaaccgccttggattgctgatt
attgatgaagagcagcattttggagtgggacataaagaaaaattaaaatctttgcgtgag
gacgtgcatgttcttactctttctgccacaccgcttccgcggacgcttcagctttcatta
tccggcgtacgggaaatgagcctgatcgccacgccgcctaccgatcgtttagcggtaaga
acatttataactccgtttgatagtgtgatgatccgtgaagcgattcaaagagagcgtttc
cggggagggcaaattttctgtgtcgttgcgcgtctggctgatatggagcggatgtcagag
cgtttaatagacattgttcctgacgctaaaattgcccaagcgcatggtcgtttaacgccg
acagagcttgagcgcgtcatgacagagttcgcggatggtaaatacgatattctgctttca
acaaacattgttgagagtgggctggatatgcccagcgttaatacaattattattcatcgt
gctgatatgtttggattaggacagctttatcagcttcgtgggcgtgtgggccgtggaaag
cagcgaggatatgcttacctgacatggcctcaaacaaagcccttatcagcaagttctcaa
aagcgtttggaagtgatgcaaacactggattcattaggggcaggatttacacttgcttcc
catgatttggacttgcgaggggcagggaatctgcttggggatgaacagtctgggcatatc
aaagaagtcggtattgaactgtatcagcaaatgctggaagacgctgttgcaggtttaaga
caggagcgtgggcgcaaagaagaggatgataaggattggacaccccatattattctggga
cttcctgttctcattcctgagaaatatgtgcccgatcttcctgttcggttagggttatat
cgacggattgcctctttgaatggtgagcaggaagtggaagcgatgcgggcggagttagtg
gatcggtttggatcacttcctcccgaggtggctaaccttctggatgttgttttgatcaaa
aagatgtgccgtgaggcaggggtagaacgactggaagctggccctaaagggatggttatt
cagttccgtaaaaatcgttttaaaaaccccgctgggcttttggactgggcaacgcgcaag
caggattctggggttaaaattagaccagatcacaaattggcattgatccgggaaatgacg
aatgccacccggatcaattttgccaagaaggtaacgaatgttttgtgtaaactagcgcgt
aaggtttag
DBGET
integrated database retrieval system
