KEGG   Sphingomonas sabuli: H8M03_10695
Entry
H8M03_10695       CDS       T07540                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ssau  Sphingomonas sabuli
Pathway
ssau03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ssau00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    H8M03_10695 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ssau03400]
    H8M03_10695 (ligD)
Enzymes [BR:ssau01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     H8M03_10695 (ligD)
DNA repair and recombination proteins [BR:ssau03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     H8M03_10695 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase
Other DBs
NCBI-ProteinID: QNM82465
UniProt: A0A7G9L1G6
LinkDB
Position
2134046..2136574
AA seq 842 aa
MARASKTLDIKTYNAKRDFSKTKEPKGRKLKGTGDSFVVQKHEASRLHWDFRLELDGVLK
SWAVPKGPSLDPGTNRLAMRTEDHPLDYGTFEGTIPEGEYGGGTVMLWDRGRWIPHPDKD
PSKTIEEGHLHFTLEGERMKGEWVMFRMKAKPGEKGEAWMLKKVTDDEARADDGDALVDH
CTDSVTTGRTMAEIASGSDVWKSNRGGTSGGRTKKAPAAAPPEFQSPQKATLVDDVPTGP
GWLFEYKYDGYRLLLATGDGAVTAWTRNGKDWSDKFRSLAKAAEKLPPGCLIDGEAVALT
KDGKPDFQLLQSTLKDGKGANLAYYAFDLLVDRGEDITKLPNIERKMRLQTLLKGAPTAI
LYGDHIDGKGEALFNAVCKDGGEGIIAKKADAPYRHGRSKSWLKIKCIERQEFVVVGWVE
SDRRIGFRSLLLAAKDKGKLSYVGKVGTGFNTQMLHDLMELMKPLEVKAAPVEIPRTERK
GAHFIKPQLVAEVAFTEFTSDNILRHPSFIALRDDKPASEVVVETPADLPKAAKAASTKA
KTKGKSATRDYATPESLGVRISSTDRAIFPTEKLTKGDLAAYYAAIGPLIMPDSGNRPIT
LIRCPQGRAKKCFFQKHDTGSMGDFVKQVEIREKKGGTAEYLCFDDIRGLLGCVQMGTIE
FHGWGSRADNVEHPDRLVFDLDPDEGLKFADVRDAARRIRDLLKDMGLETFPMLTGGKGV
HVVAPLDASADWDAVTSFAERFARAVAEAEPEMFTANMRKVQRKGRIFLDWLRNQRGSTA
VMPYSARAREGAPVAVPVAWAELDDFKGGNAFTIRDVDRLFERAESNALKGWGDVKQALP
EA
NT seq 2529 nt   +upstreamnt  +downstreamnt
atggcgcgcgcttccaagacgctcgacatcaagacctacaatgcgaagcgcgacttctcg
aaaacgaaggagcccaagggccgcaagctgaaagggaccggcgacagcttcgtcgtccag
aagcacgaagcgtcgcggctgcactgggactttcggctggaactggacggcgtgctcaaa
agctgggccgtgccaaagggcccgagtctcgacccggggaccaaccggctggcgatgcga
accgaagatcatccgctcgactacggcacgttcgaaggcaccatccccgaaggcgaatat
ggcggcggcacggtgatgctgtgggaccgcggccggtggatcccgcatcccgacaaggac
cccagcaagacgatcgaggagggccacctccacttcacgctcgaaggcgagcggatgaag
ggcgaatgggtgatgttccggatgaaggccaagcccggcgaaaagggcgaggcgtggatg
ctcaagaaggtcaccgacgacgaagcgcgcgccgatgacggcgacgcgttggtcgaccac
tgcaccgacagcgtaacgacaggacggaccatggccgaaatcgcttccggcagcgacgtg
tggaaatccaatcgcggcgggacgtcgggcggccggacgaagaaggcacccgcggccgct
ccgcccgaattccagtcgccgcaaaaggcgaccctggtggacgacgtgccgaccggcccg
ggctggctgttcgaatataaatatgacggctaccggctactgcttgccaccggcgatggc
gcggtcaccgcctggacccgcaacggcaaggactggagcgacaagtttcgcagcctcgcc
aaggccgcggaaaagcttccgcccggttgcctgatcgatggcgaggcggtggcgcttacc
aaggacggcaagcccgatttccagttgctgcagtcgacgctgaaggacgggaagggcgcg
aaccttgcctattacgccttcgacctgctggtcgatcgcggcgaggacatcaccaagctc
cccaatatcgagcgcaagatgcgcctgcagacgctcctcaagggtgcgccgacggcgatc
ctgtacggcgaccatatcgacggcaagggcgaggcactgttcaacgccgtctgcaaggac
ggcggcgaagggatcatcgccaagaaggctgacgcgccctatcgccacggccggtctaaa
agctggctgaagatcaaatgtatcgagcgacaggaattcgtcgtcgtcggctgggtcgaa
agcgaccgccgcatcggctttcgctcgctgctgctggcggccaaggacaagggcaagctc
agctacgtcggcaaggtcggcaccggcttcaatacgcagatgctccacgatcttatggag
ctgatgaagccgctggaagtgaaggccgcgccggtcgaaatcccgcggacggaacgcaag
ggcgcgcatttcatcaagccgcaattggtggcggaggtcgcgttcaccgaattcacctcg
gacaacatcctgcgccatcccagttttatcgcgctgcgcgacgacaagccggcgtcggaa
gtggtggtcgaaacccccgccgacctgcccaaggccgcgaaggcggcgtccacgaaggcc
aagaccaagggcaagagcgcaacgcgggactatgccacgccagaaagtcttggcgtgcgg
atcagcagcaccgaccgggcgatcttcccgacagagaaactaacgaagggcgacctcgcg
gcttattatgctgcgatcggcccgctgatcatgccggacagcggcaatcgcccgatcacc
ctgatccgctgcccgcaaggcagggccaagaaatgctttttccagaagcatgacaccggg
tcgatgggcgacttcgtcaaacaggtggagatccgggagaagaagggcggcacggccgaa
tatctctgcttcgacgacattcgcggactgctcggctgcgtgcagatggggacgatcgaa
ttccatggctggggcagccgcgccgataatgtcgaacatcccgaccggctggtgttcgac
ctggatcccgacgaaggattgaagttcgccgacgtgcgcgacgccgcgcggcgcatccgc
gacctgctcaaggacatgggcctggaaacctttcccatgctgaccggcggcaagggcgtg
cacgtggtcgctccgctcgacgcgtcggcggactgggatgcggtgaccagttttgccgag
cgcttcgcccgcgcggtagcggaagcggagccggaaatgttcaccgccaacatgcgcaag
gtgcagcgcaagggccgcatcttcctagactggctgcgcaaccagcgcggatcgaccgca
gtgatgccctattccgcccgcgcccgcgaaggcgcgccggtcgcggtgcccgtggcgtgg
gccgaattggacgatttcaagggcggcaatgccttcaccatccgcgatgtggacaggctg
ttcgagcgtgcggagtcaaatgcgctcaagggctggggcgacgtgaagcaggcccttccg
gaggcataa

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