Sphingomonas sabuli: H8M03_10695
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Entry
H8M03_10695 CDS
T07540
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ssau
Sphingomonas sabuli
Pathway
ssau03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ssau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H8M03_10695 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssau03400
]
H8M03_10695 (ligD)
Enzymes [BR:
ssau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H8M03_10695 (ligD)
DNA repair and recombination proteins [BR:
ssau03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H8M03_10695 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QNM82465
UniProt:
A0A7G9L1G6
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All DBs
Position
2134046..2136574
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AA seq
842 aa
AA seq
DB search
MARASKTLDIKTYNAKRDFSKTKEPKGRKLKGTGDSFVVQKHEASRLHWDFRLELDGVLK
SWAVPKGPSLDPGTNRLAMRTEDHPLDYGTFEGTIPEGEYGGGTVMLWDRGRWIPHPDKD
PSKTIEEGHLHFTLEGERMKGEWVMFRMKAKPGEKGEAWMLKKVTDDEARADDGDALVDH
CTDSVTTGRTMAEIASGSDVWKSNRGGTSGGRTKKAPAAAPPEFQSPQKATLVDDVPTGP
GWLFEYKYDGYRLLLATGDGAVTAWTRNGKDWSDKFRSLAKAAEKLPPGCLIDGEAVALT
KDGKPDFQLLQSTLKDGKGANLAYYAFDLLVDRGEDITKLPNIERKMRLQTLLKGAPTAI
LYGDHIDGKGEALFNAVCKDGGEGIIAKKADAPYRHGRSKSWLKIKCIERQEFVVVGWVE
SDRRIGFRSLLLAAKDKGKLSYVGKVGTGFNTQMLHDLMELMKPLEVKAAPVEIPRTERK
GAHFIKPQLVAEVAFTEFTSDNILRHPSFIALRDDKPASEVVVETPADLPKAAKAASTKA
KTKGKSATRDYATPESLGVRISSTDRAIFPTEKLTKGDLAAYYAAIGPLIMPDSGNRPIT
LIRCPQGRAKKCFFQKHDTGSMGDFVKQVEIREKKGGTAEYLCFDDIRGLLGCVQMGTIE
FHGWGSRADNVEHPDRLVFDLDPDEGLKFADVRDAARRIRDLLKDMGLETFPMLTGGKGV
HVVAPLDASADWDAVTSFAERFARAVAEAEPEMFTANMRKVQRKGRIFLDWLRNQRGSTA
VMPYSARAREGAPVAVPVAWAELDDFKGGNAFTIRDVDRLFERAESNALKGWGDVKQALP
EA
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcgcttccaagacgctcgacatcaagacctacaatgcgaagcgcgacttctcg
aaaacgaaggagcccaagggccgcaagctgaaagggaccggcgacagcttcgtcgtccag
aagcacgaagcgtcgcggctgcactgggactttcggctggaactggacggcgtgctcaaa
agctgggccgtgccaaagggcccgagtctcgacccggggaccaaccggctggcgatgcga
accgaagatcatccgctcgactacggcacgttcgaaggcaccatccccgaaggcgaatat
ggcggcggcacggtgatgctgtgggaccgcggccggtggatcccgcatcccgacaaggac
cccagcaagacgatcgaggagggccacctccacttcacgctcgaaggcgagcggatgaag
ggcgaatgggtgatgttccggatgaaggccaagcccggcgaaaagggcgaggcgtggatg
ctcaagaaggtcaccgacgacgaagcgcgcgccgatgacggcgacgcgttggtcgaccac
tgcaccgacagcgtaacgacaggacggaccatggccgaaatcgcttccggcagcgacgtg
tggaaatccaatcgcggcgggacgtcgggcggccggacgaagaaggcacccgcggccgct
ccgcccgaattccagtcgccgcaaaaggcgaccctggtggacgacgtgccgaccggcccg
ggctggctgttcgaatataaatatgacggctaccggctactgcttgccaccggcgatggc
gcggtcaccgcctggacccgcaacggcaaggactggagcgacaagtttcgcagcctcgcc
aaggccgcggaaaagcttccgcccggttgcctgatcgatggcgaggcggtggcgcttacc
aaggacggcaagcccgatttccagttgctgcagtcgacgctgaaggacgggaagggcgcg
aaccttgcctattacgccttcgacctgctggtcgatcgcggcgaggacatcaccaagctc
cccaatatcgagcgcaagatgcgcctgcagacgctcctcaagggtgcgccgacggcgatc
ctgtacggcgaccatatcgacggcaagggcgaggcactgttcaacgccgtctgcaaggac
ggcggcgaagggatcatcgccaagaaggctgacgcgccctatcgccacggccggtctaaa
agctggctgaagatcaaatgtatcgagcgacaggaattcgtcgtcgtcggctgggtcgaa
agcgaccgccgcatcggctttcgctcgctgctgctggcggccaaggacaagggcaagctc
agctacgtcggcaaggtcggcaccggcttcaatacgcagatgctccacgatcttatggag
ctgatgaagccgctggaagtgaaggccgcgccggtcgaaatcccgcggacggaacgcaag
ggcgcgcatttcatcaagccgcaattggtggcggaggtcgcgttcaccgaattcacctcg
gacaacatcctgcgccatcccagttttatcgcgctgcgcgacgacaagccggcgtcggaa
gtggtggtcgaaacccccgccgacctgcccaaggccgcgaaggcggcgtccacgaaggcc
aagaccaagggcaagagcgcaacgcgggactatgccacgccagaaagtcttggcgtgcgg
atcagcagcaccgaccgggcgatcttcccgacagagaaactaacgaagggcgacctcgcg
gcttattatgctgcgatcggcccgctgatcatgccggacagcggcaatcgcccgatcacc
ctgatccgctgcccgcaaggcagggccaagaaatgctttttccagaagcatgacaccggg
tcgatgggcgacttcgtcaaacaggtggagatccgggagaagaagggcggcacggccgaa
tatctctgcttcgacgacattcgcggactgctcggctgcgtgcagatggggacgatcgaa
ttccatggctggggcagccgcgccgataatgtcgaacatcccgaccggctggtgttcgac
ctggatcccgacgaaggattgaagttcgccgacgtgcgcgacgccgcgcggcgcatccgc
gacctgctcaaggacatgggcctggaaacctttcccatgctgaccggcggcaagggcgtg
cacgtggtcgctccgctcgacgcgtcggcggactgggatgcggtgaccagttttgccgag
cgcttcgcccgcgcggtagcggaagcggagccggaaatgttcaccgccaacatgcgcaag
gtgcagcgcaagggccgcatcttcctagactggctgcgcaaccagcgcggatcgaccgca
gtgatgccctattccgcccgcgcccgcgaaggcgcgccggtcgcggtgcccgtggcgtgg
gccgaattggacgatttcaagggcggcaatgccttcaccatccgcgatgtggacaggctg
ttcgagcgtgcggagtcaaatgcgctcaagggctggggcgacgtgaagcaggcccttccg
gaggcataa
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