Sus scrofa (pig): 100155891
Help
Entry
100155891 CDS
T01009
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
100155891 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssc03400
]
100155891 (LIG4)
Enzymes [BR:
ssc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
100155891 (LIG4)
DNA repair and recombination proteins [BR:
ssc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
100155891 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
100155891
NCBI-ProteinID:
XP_003131137
Ensembl:
ENSSSCG00000009540
UniProt:
A0A8D1Q102
F1RLP1
LinkDB
All DBs
Position
11:complement(75537027..75547711)
Genome browser
AA seq
910 aa
AA seq
DB search
MAASQASKTVASHVPFADLCSTLERIQRSRGRGEKMRHFKEFLDSWRKFHDALHKNHRDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDALKLLNYRTPTGTRG
DAGDFAIIAYFVLKPRCLQKGSLTIQQVNDLLDSIASNNSAKRKDLVKKSLLQLITQSSA
LEQKWLIRMILKDLKLGFSQQTIFSLFHDDAAELHNVTTDLEKVCRQLHDPSVGLSDISI
TLFSAFKPMLAAIADIERIEKDMKHQSFYIETKLDGERMQMHKDGDVYQYFSRNGYNYGD
QFGVSPQEGSLTPFIHGTFKTNVQNCILDGEMMAYNPNTQTFMQKGNKFDIKRMVEDSDL
QTCYCVFDVLMVNSKKLGHETLKNRYEILSSVFTPIPGRIEIVPKTQAHTKKEVIDALNE
AIDKREEGIMIKYPLSIYKPDKRGEGWLKIKPEYVNGLMDELDILIVGGYWGKGARGGMM
SHFLCAVAEKPPAGEKPSVFHTLCRVGSGYTMKELYDLGLKLAKHWKPFHRKAPPGSILC
GTEKPEVYIEPCNSVIVQVKAAEIVPSDMYKTGCTLRFPRIEKIREDKEWHECTTLDDLE
HLRGKAAGKLASKHLYVGDEEPQEKKRKAAPKAKKVIGIIEHLKAPNLSNINKVSNMFED
VEFCVMTGSDSHPKPDLESRIAEFGGYIVQNPGPDTYCVIAGSENIRVRNIISSNKHDVV
KPEWLLECFRTQRCAPWQPRFMVHMCPSTKQHFARQYDCHGDSYFVDTDVNQLKEVFSGI
KTPGEQTPREMAPVIADLEHRYAWDRAPLSMFRPHTVYPDLYAVINDPSTKIEGTRLAIT
ALELQFHGAEVVSHLAEGVSHVIIGEDHSRLADLKAFRRTLKRKFKILPERWAIESIDKC
ELQEENQYWV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctcacaagcttcaaaaactgttgcatctcacgtcccttttgcagacttatgt
tcaactttggaacgaatacagagaagtagaggacgtggagaaaaaatgagacacttcaaa
gaatttttagattcttggcgaaaatttcatgatgcccttcacaagaaccacagagatgtc
acagactctttctatccagccatgagactcattcttcctcagctggaaagagagagaatg
gcttatggaatcaaagaaactatgcttgctaagctttacatcgaattgcttaacctaccc
cgagatggaaaagatgccctgaagcttctaaattaccgaacacctaccggaactcgcgga
gacgccggagattttgccatcattgcgtactttgtgttgaaacccagatgtttacagaaa
ggcagtttaaccatccagcaagtgaacgaccttttagactccattgccagcaataattct
gccaaaaggaaggatctggtcaaaaagagtcttcttcagctcataacccagagttcagcc
cttgaacaaaagtggctgatccggatgattttaaaggacttaaagcttggatttagtcag
caaactatattttctctttttcacgatgatgctgctgagttgcataacgtcaccacagat
ctggagaaggtctgcaggcaactgcatgatccttcggtgggactcagtgacatttccatc
actttattctctgccttcaagccaatgctggccgctatcgcagacattgagcgaattgag
aaggacatgaaacaccagagtttctacatcgaaaccaagctagacggcgaacgtatgcaa
atgcacaaagacggggacgtgtatcagtacttctcccgaaacggatacaactatggggac
cagtttggagtttccccacaggaagggtcccttaccccgttcattcatggcacattcaaa
acaaatgtccaaaactgcatccttgatggtgagatgatggcctacaatccgaacacgcag
acctttatgcagaaggggaataagtttgatattaaaaggatggtagaagattccgacctg
cagacttgttactgtgttttcgatgtgttgatggttaatagcaaaaagctaggacacgag
accctgaagaataggtatgaaattcttagtagtgtctttacgcccataccaggtagaata
gaaatagtgccgaaaacacaggctcacactaagaaagaagtaattgatgctttgaacgaa
gccatagataaaagagaggaggggatcatgatcaaatatcctctgtccatctacaagcca
gacaaaagaggcgaaggatggttaaaaattaagccggagtatgtcaacggactgatggat
gagctggacatcttaatcgtcgggggctactgggggaaaggtgcccggggtggaatgatg
tctcattttttgtgtgctgtggccgagaagccccccgccggtgaaaaaccctcagtgttc
cataccctctgccgcgtgggctcaggctacaccatgaaagaactgtatgacctgggcttg
aaactggccaaacactggaagccctttcataggaaagctccaccaggaagcattttatgt
ggaacagagaagccagaggtgtacatcgagccttgcaattcagtcatcgttcaggttaag
gcggcagagatcgtccccagtgatatgtacaaaactggctgcacgttgcgcttcccacgc
atcgaaaagataagagaagacaaagaatggcatgagtgcacgaccctggatgacctggaa
caccttcgagggaaagcggccggaaagctcgcgtccaagcacctttacgtaggtgacgag
gaaccccaagagaaaaagcggaaagccgccccaaaggctaagaaggtcattggaatcatc
gagcacctcaaagcgcctaacctttccaacatcaacaaggtctctaacatgtttgaggac
gtggagttttgcgtcatgactggaagcgacagccatcccaagcctgacctggagagcaga
atcgcagagtttgggggttacatagtacagaatccgggccccgacacatactgcgtgatc
gcagggtctgagaacatccgcgtgagaaacatcatctcttcaaataagcacgacgtcgtc
aagcccgagtggctcctcgagtgtttcaggacccagcgctgtgcgccctggcagcctcgc
ttcatggttcacatgtgcccgtccaccaaacagcactttgcccggcaatatgactgccat
ggcgacagctactttgtcgacacagacgtgaaccaactgaaggaagtgttctcaggaatt
aaaactccgggggaacagacgccccgggagatggctcctgtgatcgccgacttggaacac
cgctatgcctgggacagggctcctctcagcatgtttcgaccccacactgtgtatcccgac
ttgtatgcagtgattaacgacccgagtaccaaaatcgagggaacgagattggccatcacg
gccttggagcttcagtttcatggggcagaagtagtgtctcatttggccgagggagtgtct
cacgtcatcattggcgaagatcacagtcggcttgcagacttgaaagcttttcgaagaact
cttaagagaaagtttaaaatcctcccagagcgttgggccattgagtcaatagacaagtgt
gaattacaggaggaaaatcaatattgggtttaa
DBGET
integrated database retrieval system
