Sus scrofa (pig): 100512219
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Entry
100512219 CDS
T01009
Symbol
POM121C
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear envelope pore membrane protein POM 121C
KO
K14316
nuclear pore complex protein Nup121
Organism
ssc
Sus scrofa (pig)
Pathway
ssc03013
Nucleocytoplasmic transport
ssc05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100512219 (POM121C)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
100512219 (POM121C)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssc03019
]
100512219 (POM121C)
Messenger RNA biogenesis [BR:
ssc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
100512219 (POM121C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POM121
Phage_holin_3_6
DUF6366
Motif
Other DBs
NCBI-GeneID:
100512219
NCBI-ProteinID:
XP_003124468
Ensembl:
ENSSSCG00000007705
LinkDB
All DBs
Position
3:10609075..10633374
Genome browser
AA seq
1216 aa
AA seq
DB search
MSPAAAAAGRGDRRRLIASVRDGRARGWGCGGPAGAALLGLSLLGLVLYLVPAAAALAWL
AVGATAAWWGLSREPRSSRAFSSLVRNARRQRTLLASPPAKSAVNGNLLEPRSLLEGPDP
AELLLMGSYLGKPGPPQPASTPEARDVRERPGRRPPARTAAPALSAHPHRVHTQPSLPTP
LLRPSRRPSHRDCGTLSHRFVITPRRRYPIQQAQYSLLGVLPTVCWNGCHKKTVLSARNS
KMVCSPVTVRIAPPDSKLIRSPLPEQVISSTLSSPSTSAPDPCAKETVLSALKERKKRTV
EEEDQIFADGQENKRRRHDSSGSGHSAFEPLVANGVPASFVPKPGSLKRGLNSQSSDDHL
NKRSRTSSLSSLTSTYTGGIPSSSRNAITSSYSSTRGLSQLWKRSGPSSSPFSSPASSRS
QTPERPAKKIREEELSHHSSSSTPLVTDRESQGEKVADTTTWKKQNSWNSPSTPGSSGQR
KRKVQLLPSRRGDQLTLPPPPQLGYSITAEDLDLEKKASLQWFNKILEDKTDTASTSVPE
SPPTSQPSFTFTLPAAGTAVPTTSLPAPSTNPLLESLKKMQNSPGLPSLPESAGMATTVA
HSPPKTPSPLAPLGSSQSGPLPGTSSDSKPTATFLGLTPASPGPVTDTTKSSPAPQAETS
AKSQAPSAPSPTPKQNIPFGMLSTPTANPPASAAPAVSSASPMFSPVFPPPPKSESEGPL
PSSPSKVTATASSSSALPTTTSSPSLTFKPVFSPMGPPASVPTITPFSFKQTAPPATTTS
TPLFTGQASATPAVASVTTASTSTDSALKPTFSFCVSSVTSTPSSVTSTTASTSQLFLFG
TPPASGASFTPAMGSIFQFGKPPAMPASTAVTTFGPSLPSAAQTAASSSTTXFSGFGSTL
TASAPATTSQPTLTFSSTTTPAFNIPFGSSAKPSLPSYPGANPQPSFGATDGQQQGAAKP
TLVPTFGSSFTFGNSAASAPTATPAPAPAPVQPTFGSTTQSAFGGLKATASGFGTAASTQ
PAFGSTTAVFSFGAATTSGFGAATQTTSSGTSSSVFGSTTPSPFTFGGSAAPAGSGGFGI
SVATPGTSSASGAFSFGAGQSGPAGSTTPFGGGLSQNSLGVPSQNTSFAFNVASTPDSKP
VFGGTSTPTFGQNAPAPGVGTSGSSLSFGASSTPTQGFVGVGPFGSAAPSFSIGAGSKPP
GARQRLQARRQHTRKK
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgtctccggcagctgcggcggctggaagaggcgaccggcggcggctgatagcgagtgtc
agggacggtcgggcccggggctggggctgcggagggccggcaggggcggcactgctcggc
ctgtcgctgctcggcctcgtgctgtacctggtgccggcggcggctgcgctggcctggcta
gctgtgggggctaccgcggcctggtggggactgagccgcgagccccgaagttcgcgcgcc
ttctcctcgctcgttcggaacgcgcgccgtcagcgaacactgctcgcctcgcccccggcc
aagtcggcagtaaacggaaatcttctagagccgcggagcttactcgaaggacctgacccc
gctgaactgctcctcatgggcagttacctgggcaagcccggccccccgcagcccgcctcc
accccggaggccagggacgtgcgggagaggcccggccgccgcccacctgcccgcaccgcg
gcgccagctctatcagcccatccccaccgcgttcatactcaaccctccctccccactcct
cttctccgaccctctaggaggccttcccaccgggattgtgggactttatcacatcggttt
gtaataacacctcgaagaagatatccaatccagcaggcccaatattccttgctgggggta
cttcccaccgtgtgctggaatggttgccacaagaagactgtgctatccgctcgcaattcc
aaaatggtgtgcagcccagtgacagtgaggattgctcccccggatagcaaattgattcgt
tcccctctaccagagcaggttatcagctcaacactgtcctcaccatcaactagtgcccca
gacccatgtgcgaaggagactgtgctgagtgccctcaaagagaggaagaaaaggacagtg
gaggaagaagaccaaatatttgctgatggccaggaaaataaaagaaggcgccacgatagc
agtgggagtggacattcagcatttgagccgctggtggccaatggagtccctgcctctttt
gtgcctaagcctgggtctctgaagagaggtctcaattcccagagctcagatgaccactta
aataagagatcgcgcacctcttctctgagctccttgacaagcacgtacacaggcggcatc
cccagctccagccgcaatgccattaccagttcttacagttctactcgaggtctctctcag
ctgtggaagaggagtggtcctagttcatctcccttctccagccccgcttcatcccgctcc
cagacgccagagaggccagcaaagaaaataagagaagaggaactttctcatcattctagc
tcttccacgccactggtaacagacagggagtcccagggagagaaggttgcagatacaacc
acatggaagaaacagaactcatggaattccccatcgacacctggcagctcagggcagcgg
aaacggaaagttcagctgctgccgtcccggcgaggggaccagctgaccttgcctccacct
ccccagcttggttattcaatcactgctgaagacttagacttggaaaagaaagcttcgtta
cagtggttcaacaagatcttggaggataagactgatactgcctcgacctctgtccctgag
agcccacctaccagtcagccttccttcacttttaccctgcctgctgctgggactgctgtc
cccacaacctccctcccagccccaagcactaacccactgttggagagcttgaagaagatg
cagaactccccaggcctaccatccctccctgaatctgctggcatggcaaccactgtggcc
cattcacctccgaagacacccagccctctggcccctcttggctcttcacagtcagggcct
cttccgggcacctcctcagactccaaacctacagccactttcttgggactgacccctgct
tcccctggaccagtcactgacaccaccaagtcatctccggcccctcaggctgagacatct
gccaaatcccaagccccgtccgccccatcccccacccccaagcagaacattccttttgga
atgctgagcacccccactgctaaccctcctgcctctgcagctcctgctgtgtcttcagca
tctcccatgttcagtcccgttttcccaccccctcccaaaagcgagagtgaaggccccttg
ccctctagcccttccaaggtcacagccacagcatcctccagctcagccctccccacgact
accagcagcccatccctcaccttcaaacctgtctttagccccatggggccacctgcatct
gtgcccacaataacccccttctccttcaagcaaacagctcctccagccactactacgagc
acccctctcttcaccggccaggccagtgccactcctgcagtggcttctgtgaccacagcc
agcacctccacagactctgctctgaagcccacgttcagcttctgtgtgagcagcgtgacc
agcaccccaagcagcgtgactagcaccactgcttccacctcccagctcttcctctttggg
actccccctgcctctggtgccagcttcaccccagctatgggctccatattccagtttggc
aagcctcctgccatgcctgcttcaacagcagtcaccacctttggcccgtcccttcccagt
gctgctcagacagccgccagcagcagcaccactnggtttagtggttttggcagcaccctt
acagcctccgccccggccaccaccagccagcccacactgacattcagtagcaccaccacc
ccggcattcaacattccctttggctcaagtgccaagccctccctcccatcatacccagga
gccaacccccagcccagcttcggagccactgatgggcagcagcagggggctgccaagcca
acccttgtccccacctttggcagctccttcacatttggaaactctgcagcctccgccccg
actgcaacgccagcgccagccccagccccagtccagccgacctttggcagcaccacacag
tccgctttcggcggcctgaaagccacagcctctggcttcggcaccgctgccagcacccag
ccagcctttggcagcaccacagccgttttctcctttggtgcagccaccacctctggcttt
ggagctgcaacccagaccaccagcagtgggaccagtagctctgtgtttggcagcacgacg
ccatctcccttcacatttgggggatcggcagccccagcgggcagtggaggctttggcatc
agtgtggctaccccaggcaccagctctgcctccggagccttcagcttcggagcaggacag
agtgggcctgctggcagcacgaccccttttgggggaggcttgagccagaacagcctgggc
gtgcccagccagaacacgtcctttgccttcaatgtggccagcacgccggacagcaaacct
gtgtttggaggcacctccacgcccacctttggccagaacgcccctgctcctggggtgggc
acgtcaggcagcagcctctcctttggggcatcctcaacacccacccagggctttgttgga
gtcggacctttcggatctgcggccccttccttttccattggtgcgggatccaagcctccg
ggggctcggcaacggctacaggcccggaggcagcacactcgcaagaagtag
DBGET
integrated database retrieval system
