Sus scrofa (pig): 100521255
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Entry
100521255 CDS
T01009
Symbol
RAPGEF6
Name
(RefSeq) rap guanine nucleotide exchange factor 6 isoform X2
KO
K08020
Rap guanine nucleotide exchange factor 6
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04015
Rap1 signaling pathway
ssc04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04015 Rap1 signaling pathway
100521255 (RAPGEF6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
100521255 (RAPGEF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RasGEF
RA
PDZ
RasGEF_N
cNMP_binding
PDZ_6
PDZ_2
Tcp10_C
Motif
Other DBs
NCBI-GeneID:
100521255
NCBI-ProteinID:
XP_005661686
Ensembl:
ENSSSCG00000014267
ENSSSCG00000014268
LinkDB
All DBs
Position
2:complement(133708265..133951433)
Genome browser
AA seq
1614 aa
AA seq
DB search
MNSPVDPGARQALKKKPPERTPEDLNIIYSYLHGMEILSNLREHQLRLMSARARYERYSG
NQVLFCSETIARCWYILLSGSVLMKDSMVLPPCSFGKQFGGKRGCDCLVLEPSEMIVVEN
SKDNEDRILQREIPARQSRRRFRKINYKGERQTITDDVDINSYLSLPADLTKMHIADNPH
PQVTHVSSSQSGCSIASDSGSSSLSDIYQATESEVGDVDLTRLPEGPVDSEDEEEEDEEI
DRTDPLQGRDLVRECLEKEPADKTDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEV
VEQAGAIILEDGQELDSWYVILNGTVEISHPDGKVENLFMGNSFGVTPTLDKQYMHGVVR
TKVDDCQFVCIAQQDYWRILNHVEKNTHKVEEEGEIVMVHEHRELDRSGTRKGHIVIKAT
PERLIMHLIEEHSIVDPTYIEDFLLTYRTFLESPLDVGIKLLEWFKIDSLRDKVTRIVLL
WVNNHFNDFEGDPAMTRFLEEFEKNLEDTKMNGHLRLLNIACAAKAKWRQVVLQKASRES
PLHFSLNGGTEKGFGIFVEGVEPSSKAADAGLKRGDQIMEVNGQNFENITFAKALEILRN
NTHLALTVKTNIFVFKELLSRTEQEKSGIPHIPKIAEKKSNRHSIQDVPGDIEQTSQEKG
NKKIKANTVSGGRNKIRKILDKTRFSILPPKLFSDGGLSQSQDDSIVGTRHCRHSLAIMP
IPGTLSSSSPDLLQPTTSMLDFSNPSDIPDQVIRVFKADQQSCYIIISKDTTAKEVVCQA
VHEFGLTGASDTYSLCEVSVTPEGVIKQRRLPDQFSKLADRIQLNGRYYLKNNMETETLC
SDEDAQELVKESQLSMLQLSTIEVATQLSMRDFDLFRNIEPTEYIDDLFKLDSKTGNTHL
KEFEDIVNQETFWVASEILTESNQLKRMKIIKHFIKIALHCRECKNFNSMFAIISGLNLA
SVARLRGTWEKLPSKYEKHLQDLQDLFDPSRNMAKYRNILSSQSMQPPIIPLFPVVKKDM
TFLHEGNDSKVDGLVNFEKLRMIAKEIRQVVRMTSANMDPAMMFRQRKKRWRSLGSLSQG
STNSNMLDVQGGAHKKRARRSSLLNAKKLYEDAQMARKVKQYLSSLDVETDEEKFQMMSL
QWEPAYGTLTKNLNEKRYVKSSEMSPVPMRSAGQTARAHLHQPHRVSQVLQVPAVNLHPI
RKKGQAKDSAMLSTGLPQKVLVTTEEINGKKHTEDTISVASSLHSSPPASPQGSPRKGYT
LIPSAKSDNLSDSSHSEISSRSSIVSNCSVDSMSAALQDERCSSQAVAAPAPSGASEKAE
HSSGRGDHSQLGPGWTLSKPSLIKSLAVSSSMSNEEISHEHIIIEAADSGRGSWTSCSSS
SHDNFQSLPNPKGWDFLNSYRHTHLDGPIAEVEPTDFEPYSCPKGCSRTCGQCKGSPETN
QMRQSWASSSSLSDTYEPNYGTVKRRVLENTPAESSEGLDHKDAVDPVYKTVTSSTEKGL
IVYCVTSPKKEDRYREPPPTPPGYMGISLADLKEGPHLHLKPPDYSVAVQRSKMMHHSLS
RLPPASLSSIPVACVPSKIVTQPQRHNMQPSHPKLADVTDADSEADENEQVSAV
NT seq
4845 nt
NT seq
+upstream
nt +downstream
nt
atgaactcgcccgtggaccccggcgctaggcaggcgctgaagaagaagccgcccgagcgg
acgcccgaggacttaaatattatttattcctatcttcatggaatggaaatattatcaaat
ctcagggaacatcagcttagattaatgtctgcaagagcacgctatgagagatacagtggc
aatcaagttcttttttgttcagaaactattgccagatgttggtatatcctgctttctgga
tctgtgcttatgaaagactccatggtcttgcctccttgcagttttggtaagcagtttgga
ggaaaaagaggatgtgattgtcttgtattagaaccttcagaaatgattgtggtagagaat
tccaaggataacgaagatcgcattctacaaagggaaattcctgccagacagtctcgacga
agatttcggaaaattaattataaaggagaacgccagactattactgatgatgtggacatt
aacagctatctttctcttccagccgatcttaccaagatgcacatcgcagacaaccctcat
ccacaggtgactcatgtgtcttctagtcagtctggttgtagcatcgccagtgactctggg
agcagcagtttatctgatatttatcaggctacagaaagtgaggtaggagatgtagattta
acacgtcttccagaaggacctgttgattctgaagatgaagaagaggaagatgaagagatt
gatcgaacagatccattgcaggggcgagatcttgttcgagaatgtcttgagaaagaacct
gcagataaaactgatgatgacattgaacaattattggagtttatgcaccagcttcctgct
ttcgcaaacatgaccatgtctgtaaggagagaactctgctcagtgatgatttttgaagta
gtagagcaggctggagctattattcttgaagatgggcaagagcttgactcatggtatgtt
attttaaacggcactgtagaaattagtcatcccgatggaaaagttgaaaatctctttatg
ggaaatagttttggagttactcccactttggataagcagtatatgcatggagttgtaagg
actaaagtcgatgattgtcagtttgtctgcatagcccagcaggattattggagaatttta
aatcatgtggaaaaaaatacccacaaagttgaggaagaaggagaaattgttatggtacat
gagcaccgtgaactagatcgaagcggaaccaggaaaggacacattgtaatcaaggcaaca
cctgagcgtctcatcatgcatttaatagaagagcattccattgtggacccaacttatata
gaagatttcctattaacttatagaacatttcttgagagtcctttggatgttgggatcaaa
ctcttggagtggtttaaaattgacagcctaagggataaggtaacacggattgtgttatta
tgggtaaataatcattttaatgattttgaaggtgatcctgctatgactcgatttctggag
gaatttgaaaaaaatctggaagatacaaaaatgaatggtcatctccggttattgaatatt
gcttgtgctgcaaaagctaagtggagacaggttgtgctgcagaaggcttcccgggagtcc
cctctgcatttcagccttaatggagggactgagaaaggatttggtatttttgttgaaggt
gtagaacctagtagcaaagctgctgatgctggactgaaacgtggtgatcagataatggaa
gtaaatggacaaaactttgagaatataacatttgcgaaggcccttgaaattttgaggaat
aatactcatcttgcacttactgtaaagaccaacatttttgtgttcaaagaattacttagt
aggactgagcaagagaaatcgggtattcctcatattccaaaaattgctgaaaaaaaaagt
aatcgccattcaatccaggatgtaccaggagatattgaacagacttcacaggagaaagga
aataagaaaataaaagcaaatactgtttcaggtggaagaaacaaaatcaggaaaattttg
gacaaaacacgatttagtatattgcctccaaaactatttagtgatggaggcctgagccaa
tcacaagacgacagtattgtgggaacaagacactgtaggcacagtctggctataatgcct
atccctggaacactctcatccagcagtcctgacctcctgcagcctaccaccagcatgttg
gatttttctaatccttcagatattcctgatcaagttataagagttttcaaagcagatcaa
caaagttgctacattatcatcagtaaagacactacagctaaagaagttgtttgtcaagct
gttcatgaatttggtttaactggtgcatccgacacatattctctctgtgaagtttctgtt
acccctgagggtgtcataaagcagagacgacttccagaccagttctccaaattagctgat
agaattcagctcaatggaaggtattatttaaaaaataacatggaaacagaaaccctatgt
tcagatgaagatgctcaagaactagttaaggaaagccagctatccatgctgcaactcagt
actattgaggtggccactcagctgtcaatgagggattttgatttatttcgtaatatcgag
cctactgaatatattgatgacctttttaagttagattccaaaacaggaaatactcacttg
aaagaatttgaggatattgtaaaccaagagacattctgggttgcctcggagattttaact
gaatcaaatcagctcaaacgaatgaagatcattaaacattttattaaaattgcacttcat
tgtcgagaatgtaagaacttcaactccatgtttgcaataataagtggcttgaatctggca
tctgttgcacgactcagaggtacttgggaaaagttaccaagcaagtatgagaaacatctc
caagatctccaagacctttttgatccatctagaaacatggcaaaatacagaaatattctt
agtagtcaaagtatgcagcctccaattattcctctcttccctgttgtcaagaaagatatg
acatttctacatgaaggaaatgattccaaagtagatggtttagtaaattttgagaagctc
agaatgattgccaaggaaattcgtcaagttgttcgaatgacttctgctaacatggaccca
gctatgatgttccgtcagaggaagaagaggtggcggagtctggggtcgctgagtcagggc
agcacaaattcaaacatgctagatgttcagggaggtgctcacaaaaaacgggcgcgtcga
agctctctgcttaatgccaagaagctatacgaggatgcccaaatggcgaggaaagtgaag
cagtatctttccagcctggatgtagagacagatgaggagaagttccagatgatgtcattg
cagtgggagcctgcatatggtactttgaccaagaatttaaatgagaaaagatatgtcaaa
tcatcagaaatgtctccagtgcctatgaggtcagctggccaaacagctagagcccatttg
catcagcctcacagagtaagccaggtgcttcaggtgccagctgttaatttgcaccccatc
aggaagaagggacaagcaaaagattctgctatgttgagtacaggtttacctcagaaagtt
ctggtaacaaccgaagaaataaatggtaagaaacatacagaagatactatttctgtggca
tcatccttacattctagtcctcccgcgtctcctcaaggttcccctcgcaaaggttataca
ctcattccatcagctaaatctgacaacttgtctgactccagccatagtgagatttcgtca
cggtccagcattgtgagcaactgttctgtcgactccatgtctgcagccctacaggatgaa
cggtgttcctcccaggctgttgcagcccctgcccccagcggagcttcggaaaaggcagag
cactcctcagggagaggagaccatagccagcttggccctgggtggacactctcaaagcca
tctctaatcaagagcttagctgtctcatcttctatgagcaatgaagagatttctcatgag
catatcattatagaagcagccgatagtggtcgtggaagttggacttcctgttcaagcagc
tcccatgataatttccaaagccttccaaacccaaaaggctgggattttttgaactcttat
cgacacacccatttggatggtcccatagccgaagttgaacccactgactttgagccctat
tcctgtcctaaaggctgctctcgaacttgtggtcagtgtaaaggaagcccagagactaat
cagatgagacagagttgggcttcctctagctctctgtctgacacatacgagccaaattat
gggacagttaaacggagagtattggaaaacactccagctgagtcgtctgagggcttggac
cacaaggatgccgttgacccagtttataaaactgttacttcaagtacagaaaagggcttg
attgtgtactgtgtcacctcacccaagaaggaggataggtatagggagcctcctccgact
cctccgggatacatggggatttctttagcggacctaaaggaaggaccccacctacaccta
aaacctccagattatagcgtggcagtgcagaggtcaaagatgatgcatcacagcctctct
agactgccaccagcttctctcagtagcatcccggtggcctgtgttccatcgaagattgta
actcagcctcaaaggcataatatgcagccgtctcatcctaaactagcagatgtgactgac
gcagatagcgaagcagatgaaaatgaacaggtgtcagcagtctag
DBGET
integrated database retrieval system
