Sus scrofa (pig): 100625522
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Entry
100625522 CDS
T01009
Symbol
TGFBRAP1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 isoform X1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
ssc
Sus scrofa (pig)
Pathway
ssc04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
100625522 (TGFBRAP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ssc04131
]
100625522 (TGFBRAP1)
Membrane trafficking [BR:
ssc04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
100625522 (TGFBRAP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_2
Vps39_1
Clathrin
CNH
Motif
Other DBs
NCBI-GeneID:
100625522
NCBI-ProteinID:
XP_003354755
Ensembl:
ENSSSCG00000024636
UniProt:
A0A4X1VZN8
I3LIP2
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All DBs
Position
3:49469898..49521879
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AA seq
873 aa
AA seq
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MDGFIRSRSRPAAAMMSTKAFTLVPAVEREQLMGDRERVSLECVECCGRNLYLGTSDCFV
YHFLLEEKTLPTGTATFTATRQLHRHLGFKKAVNELRAASALSRLLVLCDGCISLVHMLS
LEPVPSGARIKGAAAFALNENPVSGDPFCVEVCIISVKRRTIQVFLVYEDRVQIVREVST
PEQPLAVAVDGHFLCLALSTQYIILNYSTGASQDLFPYCSEEKRPIVKRIGRQEFLLAGP
GGLGMFATVAGISQRAPVHWSENVIGAAVCFPYVIALDDEFITVHSMLDQQQKQTLPFKE
GHILQDFEGRVIVATNKGVYILVPRPLEEQVQGLLASHRVEEALVLAKGARRNIPKEKFQ
VMYRRVLQQAGFIQFAQLQFLEAKELFRSGQLDVRELISLYPFLLPTSSSFTRSHPPLHE
YADLNQLTQGDQEKVTRCKRFLMSYLNEVRSTEMANGYKEDVDTALLKLYAEADHDSLLD
LLVTENFCLLTDSAAWLEKHKKYFALGLLYHYNKQDAAAVQLWVNIVNGDVQDATRSDLY
EYVVDFLTYSLDPDLVWTYADWVLQKSQEVGVQVFTKRPLDDQQGSFNPDDIITCLKKYP
RALVKYLEHLVMDRRLQREEYHTHLAMLYLDEVLQQKPGANATGAAVTETRAKLRHLLQK
SDSYRVHFLLDRIRGAGLPMESAILHGKLEQHEDALRILVHELADFPAAEDYCLWRSEGR
DPPYRQRLFHLLLALYLGPGPSSTELTVAAVDLLNRHAAEFDAAQVLQLLPGSWSVQLLC
PFLTGAVRDSIHARRTTQVAVGLAKSENLIYKYDKMKLKGSSVRLSDKKLCQLCQTPFSE
PAFVRFPNGGLVHTHCAASRHTNPRSPSPGART
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggatggattcattcgttcacgcagcagaccagccgccgccatgatgagcaccaaggcc
ttcaccctagtccccgccgtggaacgggagcagctgatgggcgacagagagcgggtgtcg
ctggagtgcgtggagtgctgcggtaggaacctgtacctgggcaccagtgactgctttgtg
taccacttcctgctggaggagaagaccctgcccacggggacggccaccttcactgccacc
cggcagctgcacagacacctgggcttcaagaaggcagtgaacgagctgcgggcggcgtcg
gccctcagccggctgctggtgctgtgcgacggctgcatctccctggtccacatgctgagc
ctggagcccgtgccgtctggcgcccgcatcaagggggccgcggcgtttgccttgaacgag
aacccggtgagcggggacccgttctgcgtggaggtctgcatcatctccgtcaagcgcagg
accatccaggtgttcctggtgtacgaggaccgcgtgcagatcgtcagggaggtgtcgacg
ccggagcagccgctggctgtggcggtggacggccacttcctgtgcctggccctgagcacc
cagtacatcatcctgaactacagcacgggcgcctcgcaggacctgttcccctactgcagc
gaggagaagcggccgatcgtcaagaggatagggagacaggagttcctcctggcgggcccc
gggggactgggcatgttcgccacagtggccgggatatctcagcgagcccccgtgcactgg
tcggagaacgtcattggggcggccgtctgcttcccctacgtcatcgcactggatgacgag
ttcatcacagttcacagcatgctggaccagcagcagaagcagactctaccctttaaggaa
ggccacatcctccaggattttgaaggaagagtcattgtcgccacaaataaaggagtttac
atcttggttccgcggcctctggaggagcaggtgcagggtctcctagcaagccacagggtg
gaggaggccctggtgctggcgaaaggcgcccggaggaacattccaaaggaaaagtttcag
gtcatgtacaggcgggttctgcagcaggcaggcttcatacagtttgcacagctccaattc
ctggaggctaaagaactcttcaggagcggccaactcgacgtgcgggagctcatctccctc
tatcccttcctgctgcccacatcctcctcgttcacccggtcccaccctcctctccacgag
tatgcagacctcaaccagctgacccagggcgaccaggagaaggtgaccaggtgcaagcgc
ttcctcatgtcctacctgaatgaggtccgcagcacggagatggccaacggctacaaggag
gacgtcgacacggccctgctcaagctgtacgcggaggccgaccacgacagcctgctggac
ctcctggtcaccgagaacttctgtctgctcaccgacagtgctgcctggctggagaagcac
aaaaagtactttgccctgggtttgctgtatcattacaacaagcaggatgctgctgcagtt
cagctgtgggtgaacattgtcaacggggatgtccaggacgccacacgctcagacctgtac
gagtacgtggtggatttcctcacctacagcctcgaccccgacctcgtgtggacctacgcc
gactgggtcctgcagaagagccaggaggtcggagttcaggttttcaccaagagaccactg
gatgaccagcagggtagttttaacccagacgatattatcacttgccttaagaagtaccct
cgggctctggtgaagtacctggaacatctggtcatggacaggagactgcagagggaggag
taccacacgcacttggccatgctctacctggatgaggtgctgcagcagaagcccggcgcc
aacgccacgggtgcagcagtgaccgagacgcgggcgaagctgcgacacctgctccagaaa
tccgactcataccgagtccacttcctcctggacaggatccggggcgccgggcttcctatg
gagagcgccatcctgcacgggaagctggagcagcacgaggacgccctgcgcatcctcgtc
cacgagctggcggacttcccggcggcggaggactactgtctgtggcgctccgagggcaga
gacccaccctaccgccagcggctcttccacctgctgctggccctctacctcggccctggc
ccctcctcgactgagctgaccgtggccgccgtggacctcctaaaccgccacgccgcggag
tttgacgccgctcaggtcctgcagctgctgccaggctcgtggtcggtgcagctgctctgc
ccgttcctaacgggggccgtgagggacagcatccacgctcggaggaccacccaggtggcc
gtgggcctggccaagtccgaaaacctgatctacaaatatgacaagatgaagctgaaagga
agctctgttcggctctcagacaaaaagctctgccagttgtgccaaaccccgttctccgag
cccgcgtttgtcaggtttcccaacggggggcttgtccacacccactgtgcggccagcaga
cacacgaacccccgctccccgagccccggggcccggacttga
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