Sus scrofa (pig): 397173
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Entry
397173 CDS
T01009
Symbol
SOX6
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
ssc
Sus scrofa (pig)
Brite
KEGG Orthology (KO) [BR:
ssc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssc03000
]
397173 (SOX6)
Transcription factors [BR:
ssc03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
397173 (SOX6)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
397173
NCBI-ProteinID:
XP_020940976
Ensembl:
ENSSSCG00000023065
LinkDB
All DBs
Position
2:42447391..43068824
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AA seq
870 aa
AA seq
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MPSSSEVLADVVRESRIEEWKSSHFIRMSSKQATSPFACAADGEEAMTQDLTSREKEEGS
DQHVASHLPLHPIMHNKPHSEELPTLVSTIQQDADWDSVLSSQQRMDSENNKLCSLYSFR
NTSTSPHKPDEGSRDREIMTSVTFGTPERRKGSLADVVDTLKQKKLEEMTRTEQEDSSCM
EKLLSKDWKEKMERLNTSELLGEIKGTPESLAEKERQLSTMITQLISLREQLLAAHDEQK
KLAASQIEKQRQQMDLARQQQEQIARQQQQLLQQQHKINLLQQQIQQVQGHMPPLMIPIF
PHDQRTLAAAAAAQQGFLFPPGITYKPGDNYPVQFIPSTMAAAAASGLSPLQLQKGHVSH
PQINPRLKGLSDRFGRSLDTFEHGGGHSYNHKQIEQLYAAQLASMQVSPGAKMPSTPQPP
NTAGAVSPTGIKNEKRGTSPVTQVKDEAAAQPLNLSSRPKTAEPVKSPTSPTQTLFPASK
TSPVSLPNKSSIPSPIGGSLGRGSSLGKWKGQHQEETYELDILSSLNSPALFGDQDTVMK
AIQEARKMREQIQREQQQQQPHGVDGKLSTMNNMGLNNCRNEKERTRFENLGPQLTGKSS
EDGKLGPGVIDLTRPEDAEGSKAMNGSAAKLQQYYCWPTGGATVAEARVYRDARGRASSE
PHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLS
KIHLEKYPNYKYKPRPKRTCIVDGKKLRIGEYKQLMRSRRQEMRQFFTVGQQPQIPITTG
TGVVYPGAITMATTTPSPQMTSDCSSTSASPEPSLPVIQSTYGMKTDSGSLAGNEMINGE
DEMEMYDDYEDDPKSDYSSENEAPEAVSAN
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgccctcgagttctgaagttctggctgatgtggtaagagaaagccggattgaagagtgg
aagagcagccacttcataagaatgtcttccaagcaagccacctctccatttgcctgtgca
gctgatggagaggaagcgatgacccaagatttgacctcaagagaaaaagaagaaggcagt
gatcaacatgtggcctcccatctgcctctgcatcccataatgcacaacaaacctcactct
gaggagctaccaacacttgtcagtaccattcaacaagatgctgactgggacagcgttctg
tcgtctcagcaaagaatggattcagagaataataagttatgttccctatattccttccga
aatacctctacctcaccacataagcctgacgaagggagtcgggaccgcgagataatgacc
agtgttacttttggaaccccggaacgccgcaaagggagccttgccgatgtggtggacaca
ctgaaacagaagaagcttgaggaaatgactcggactgaacaagaggattcctcctgcatg
gaaaaactactttcaaaagattggaaggaaaaaatggagagattaaataccagtgaactt
cttggagaaattaaaggtacacctgagagcctggcagaaaaagaacggcagctctctacc
atgattacccagctgatcagtttacgggagcagctcctggcagcgcatgatgaacagaaa
aaactggcagcctcacaaattgagaaacaacggcagcaaatggaccttgctcgccaacag
caagaacagattgcaagacaacagcagcaacttctgcaacagcagcacaaaattaatctc
ctgcagcaacagatccagcaggttcagggtcacatgcctccgctcatgatcccaattttt
ccacatgaccagcggaccctggcagcagctgctgctgcccaacagggattcctcttcccc
cctggaataacatacaaaccaggtgataactaccccgtacagttcattccatcaacaatg
gcagctgctgctgcctctggactcagccctttacagctccagaaaggtcatgtctcccac
ccacaaattaacccaaggctaaagggcctaagtgaccgttttggcaggagtttggacacc
tttgaacatggtggtggccactcttacaaccacaaacagattgagcagctctatgccgct
cagctggccagcatgcaggtgtcacctggagcaaagatgccatcaactccacagccacca
aacacagcaggggcagtctcacctactgggataaaaaatgaaaagagagggaccagccct
gtaactcaagttaaggatgaagcagcagcacagccgctgaatctctcatcccgacccaag
acagctgagcctgtaaagtccccaacatctcccacccagaccctcttcccagccagcaaa
accagccctgtcagtctgcctaacaaaagcagcatccccagccccattggaggaagtttg
ggaagaggatcctctttaggtaaatggaaaggtcaacaccaggaagagacttatgaacta
gatatcctgtccagtctcaactcccctgccctgtttggggatcaggatacagtgatgaaa
gctattcaggaggctcggaagatgcgagaacaaatccagcgggagcaacagcagcagcag
ccacatggtgttgatgggaagctgtccaccatgaataacatggggctgaacaactgcagg
aatgaaaaggaaagaacccgtttcgaaaacttggggccccagttaacaggaaagtcaagt
gaagatggaaagctgggcccaggtgtcattgatctaactcgaccagaagatgcagaggga
agtaaagcaatgaatggctctgcagctaaactacagcagtattattgttggccaacagga
ggtgccactgtggctgaagcacgagtctacagggatgcccgtgggagggccagcagcgag
ccacacatcaagcgaccaatgaatgcattcatggtttgggcgaaggatgagaggaggaaa
atccttcaggcctttcctgacatgcataactccaacattagcaaaatcttaggatctcgc
tggaaatccatgtccaaccaagagaagcaaccttattatgaagagcaggcccggctaagc
aagatccacttagagaagtacccgaactataaatacaaacctcgaccgaagcgcacctgc
attgttgacggcaaaaagctccggattggggagtataagcaactgatgaggtctcggaga
caggagatgaggcagttctttactgtggggcaacagcctcagattccaatcaccacagga
acaggtgttgtgtatcctggtgctattactatggcaactaccacaccatcacctcagatg
acatctgactgctctagcacctccgccagcccagagcccagcctcccggtcatccagagc
acttatggtatgaagacagacagcggaagcctagctggaaatgaaatgatcaatggagag
gatgaaatggaaatgtatgacgactatgaagatgatcccaaatcagactatagcagtgaa
aatgaagccccagaagctgtcagtgccaactga
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