Sporothrix schenckii: SPSK_00232
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Entry
SPSK_00232 CDS
T05555
Name
(RefSeq) regulator of nonsense transcripts 3
KO
K14328
regulator of nonsense transcripts 3
Organism
ssck
Sporothrix schenckii
Pathway
ssck03013
Nucleocytoplasmic transport
ssck03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
SPSK_00232
03015 mRNA surveillance pathway
SPSK_00232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssck03019
]
SPSK_00232
Messenger RNA biogenesis [BR:
ssck03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
SPSK_00232
mRNA cycle factors
P-body specific factors
SPSK_00232
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
27662487
NCBI-ProteinID:
XP_016586642
UniProt:
A0A0F2M732
LinkDB
All DBs
Position
Unknown
AA seq
784 aa
AA seq
DB search
MSAPQVLSRKANGTQPVAASKTAATTASQPTAREAVATTTILPADDAGKPAKTKPVQEGE
KVVIRRLPPGLTKDEFQSILGDEWKEGNGKIGWLSFHAGKVSNDHSKPSSPAYATVHVLD
RQDLNALSDAVRTASWFDNREASTFIGPPSAEFSLYKKVPSGKRRLDSRQGTIDQDPEFM
AFLEALANPAAAAGGKDGASAADNSDPSAAGGGDDDGKSKSNAQSTPLIDFLREKKANKS
KEAALAKAAKRDGKGKGAAGDDSTKKGRGSKDKDGAGAGSGRGDRKERESRSGRSKGGTL
KILTKKAGSASAAPSGPTPSTAANNALAAAAAARDEAPRSRRAGILAAARILQRDLGLSP
GNAHRRARAAAAAQATAQTEADSKPSGATTGKGDGKGQKDDGTTTPGAASSNTTASASKT
ATATDASAQASGNTKGGSRDERSARGSRGKKNESGKGRGGSNADKGSDNTAPPAPTPTKI
LLKKKDDTTTTAPSTTANTNVPSPAAAAGTATSSPAATKAGSGSKSETKEKGGKAGDGEG
GRARNKKDGGAKPQPAPSGTGGPSASPGPTRAFVKHANPSQGVTEGLLKEAMLGFGAVTF
VEIDRRKGFAFVDFAEPASLARAMAASPIAIAQATVQVLERKDRDAKKSGGSGGAGGGGE
KGGDQGPPSKKAANQSSAAAGDTPAAAAAAATASTSDQVSVTGSVAGGADSAGADSKRPP
RRRGGRKRGGGGGDDGDGKEGGGGANGANGANGGGGGGGGGGGHRNRRGGNKASAEGSAP
KASN
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgccccaggtgctgtcgcgcaaggcgaacggcacacagcccgtggccgccagc
aagacagcagccacgacagcatcacaacctacagccagggaagcagtggcaacgacaaca
atcttaccggccgacgatgctggcaaacccgcaaaaaccaaaccggtccaggagggcgag
aaggtggtgattcgtcggcttccccccggtctgaccaaggatgagtttcagtccatcctg
ggagacgagtggaaagaaggcaacggcaagattggctggctttccttccatgccggcaag
gtgtccaacgatcattccaagccctccagccccgcctacgcaaccgtccacgtccttgac
cggcaagacctcaacgccctatccgacgccgtgcgcacggcctcatggttcgacaaccgg
gaagcgtcgacctttattggtcccccgtcggccgagttctccttgtacaaaaaggtgcct
agcggaaagcgccgtctggacagccggcaaggcactattgaccaggacccggaattcatg
gctttcttagaggccctggccaacccggctgctgcggccggtggcaaggacggcgcgtcg
gctgcagataacagcgacccatcagccgcaggtggcggcgacgacgacggcaaatcgaag
agcaatgctcagtccacacccctcattgactttttgcgcgaaaagaaggccaacaaaagc
aaggaggcagccctggccaaggccgctaagcgcgacggcaagggcaagggtgcggcaggc
gacgattcaaccaagaagggtcgcggctccaaagataaggatggtgccggtgccggcagt
gggcgcggcgaccgcaaagaacgggagagccggtccggccggtctaagggcggcacatta
aagattttaacaaagaaagccggaagtgcatcggccgcgcctagtggcccgacgccgtct
acggccgccaacaatgcgctggccgccgccgcggcagcacgcgacgaggcacccaggagc
cgccgtgcgggcattctggctgctgcccgcatcctacagcgcgacctgggcctcagtccg
ggtaacgctcacagacgagcacgggccgctgctgctgcgcaggccacggcgcaaactgaa
gccgactcaaaacccagcggagctaccactggtaaaggggacggcaagggacagaaggac
gacgggaccactacgccaggcgccgcctcctcaaatacaactgcatcggcctccaagaca
gcaacagccacagacgcttctgcacaagcctctggaaatacgaaaggcgggtcacgcgac
gagcggtccgctcgcgggtcgagaggcaagaagaacgagtcaggcaagggacggggtggc
tcgaatgcggacaaaggatctgataatacagcgcctcccgcgccaacacctacgaaaatt
ctcttgaaaaagaaagacgatactaccacaacagcaccatccacgactgcaaatacgaat
gtaccttcccctgcggcagctgcagggacagcgacgtcttctccggccgcgaccaaggct
ggcagtggcagcaaatctgagaccaaagagaagggaggcaaggcgggtgatggtgaaggt
ggacgggccagaaacaagaaagacggtggcgccaagccgcaaccggcaccgtccggaacc
ggtgggccatcggcgtcgcccggtcccacgcgggcttttgtcaagcacgcaaatccgtcg
cagggcgtgaccgagggattgctcaaagaagccatgctcgggttcggcgccgtgaccttt
gtcgagattgaccgccgcaaaggtttcgcctttgtcgactttgccgaaccggccagtctt
gcgcgggccatggccgcatcgcccatcgcgattgcgcaggccactgtacaagtgctggag
cggaaagaccgcgacgccaaaaagagcggtggcagtggtggtgctggtggcggcggtgaa
aagggaggcgatcaggggccgccttccaagaaagctgccaaccagtcatcggctgccgcc
ggcgatacgcctgccgcagctgctgctgccgctactgcttccacgtcggatcaggtgtcc
gtcactggaagtgtagcgggtggtgcggactctgccggcgctgatagcaaacggccaccc
cgccgtcggggcggacgcaagcgcggaggaggaggaggtgacgacggcgatgggaaagaa
ggcggcggcggtgccaacggtgccaacggtgccaacggtggtggtggtggtggtggcggc
ggcggcggccaccgcaacagacgcggtggaaataaggcgtcggctgagggtagtgccccg
aaagcttctaattga
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