Sporothrix schenckii: SPSK_02439
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Entry
SPSK_02439 CDS
T05555
Name
(RefSeq) transcription initiation factor TFIIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
ssck
Sporothrix schenckii
Pathway
ssck03022
Basal transcription factors
ssck03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssck00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
SPSK_02439
09124 Replication and repair
03420 Nucleotide excision repair
SPSK_02439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ssck03021
]
SPSK_02439
03400 DNA repair and recombination proteins [BR:
ssck03400
]
SPSK_02439
Transcription machinery [BR:
ssck03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
SPSK_02439
DNA repair and recombination proteins [BR:
ssck03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
SPSK_02439
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
SKI
Motif
Other DBs
NCBI-GeneID:
27664588
NCBI-ProteinID:
XP_016588985
UniProt:
A0A0F2MB49
LinkDB
All DBs
Position
Unknown
AA seq
534 aa
AA seq
DB search
MATAPSLTLSDYLEKQPGTSFRRLYQQPSTTLAIFRRMLTPLAKTFVRMMLYLDGPLLLD
TLDTMVAPDAKRQKDQALSILRSLHVVQITPAVRDKPQEIMLTANFKNSFRLALEGGGRQ
NSFGVPSEKPVSADIDIPFLDRFARRKWEDILHYVVNSVGIPGSGSTFEGGSGGGGGGSG
GPKSTVKDLLLAGRLVERRTGMPGGVGITQTGFTFLLQAANAQVWTLLLQWLEAVDQHHA
SSDGGTVDSVDMLSFLFMLSTLELGRAYDTNALTEPRRDMLPSLMDFGLVYIPPHERASQ
YFPTRLATTLTGGGDADAAGAGAGGGGSGSGSGGGGLRSVKAGFAAATADSVAAAGLPPV
SGVDAPAARKGQGSIIMETNFRMYAFTSSPLQIAVLALFVKLNHRFPGMVGGKMSRESIR
RAISYGITSDQIISYLAANAHEQMHRYAAANHRPVLPPTVVDQIRLWELENERMKSSKGF
LFKDFDTPREYETMAQYADEIGVLVYRNDKKRHFFVTKHEQLVAYLKARKKAEA
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgctccctccctcaccctctccgactacctcgagaagcagcccggcaccagc
ttccgccgcctctaccagcagccatccaccaccctcgccatcttccgtcgcatgctgacc
cccctcgccaagacctttgtccgcatgatgctctacctcgatgggccgctgctgctggac
acgctcgacaccatggtcgccccggacgcgaagcgccaaaaggaccaggccctgtcgatt
ctgcggtcgctccacgttgtgcagatcacgcccgccgtgcgcgacaagccccaggagatt
atgctgacggccaacttcaagaactcgttccggctcgcgctcgagggcggtgggcggcaa
aacagcttcggcgtgccgagcgagaagcccgtgtcggccgacattgacattccctttctc
gaccggtttgcgcggcgcaagtgggaggacattctgcactacgtcgtgaacagcgtcggc
atcccggggtcgggcagcaccttcgagggtggcagcggcggcggcggcggcggcagcggc
ggtcccaagagcacggtcaaggatctgctgctggccggccgtctggtggagcggcgcacg
ggcatgccggggggcgtgggcatcacccagacgggcttcacgttcttgctgcaggccgcc
aacgcacaggtctggacgctgctgctgcagtggctcgaggccgtcgaccagcaccacgcg
tcgtcggacggcggcaccgtcgacagcgtggacatgctgtcctttttgtttatgctgtcg
acgctcgagctcggacgcgcgtacgacaccaacgccttgacggagccgcgccgcgacatg
ctgccctcgctcatggactttggcctcgtctacatcccgccgcacgagcgcgcctcccag
tactttccgacacggctggcgaccacgctgacgggcggtggcgatgccgacgccgccggt
gccggtgccggtggcggtggcagtggcagtggcagtggcggcggcggtcttcgcagcgtc
aaggccggttttgcggccgccacggccgacagcgtcgccgccgccggcctgccccccgtc
tccggggtggacgcgccggccgcccgcaaggggcagggcagcatcatcatggagaccaat
ttccgcatgtacgccttcacctcgtcgccgctccaaatcgccgtcctcgccctctttgtc
aagctcaaccaccggttccctggcatggtcggcggcaaaatgtcccgcgagtccatccgc
cgcgccatctcgtacggcatcacctcggaccagatcatctcgtacctggccgccaacgcc
cacgagcagatgcaccgctacgccgcggccaaccaccgccccgtgctgccgcccaccgtc
gtcgaccagatccgcctgtgggagctcgagaacgagcgcatgaagtcgagcaaggggttc
ctctttaaggatttcgacaccccgcgcgagtacgaaacgatggcccagtacgccgacgag
attggcgtgctggtctaccgcaacgacaagaagcggcactttttcgtcacgaagcacgag
cagctcgtggcctacctcaaggcgcggaagaaggcagaggcctag
DBGET
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