Syngnathus scovelli (Gulf pipefish): 125976285
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Entry
125976285 CDS
T08785
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03013
Nucleocytoplasmic transport
sscv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125976285
03015 mRNA surveillance pathway
125976285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125976285
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
125976285
5.6.2.5 RNA 5'-3' helicase
125976285
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
125976285
mRNA cycle factors
Common to processing body (P body) and stress granule
125976285
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
125976285
NCBI-ProteinID:
XP_049588336
LinkDB
All DBs
Position
Unknown
AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTPSQLDGQVNG
PDDGLHNGGVEDSVVKASQLLAELNFEEDEEDAYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKATSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNTVGRPSNMYFQTHDQIGMIGAGPGHMA
AMNLPIPFNLVMPPMPPPSYLGQTNGPATGRGAMKGNKPGRGGRQRPRGSAAQGATHGPN
SQASQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQ
DSTYQGERAYQHGGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccaagctcccagaccctcaccttcttggacaccgaggaa
gcggagttgctcggagcggacacccagggctccgaatacgacttcaccgacttcactctc
ccgagccagactcagacccagggccagactccgagtcagcttgacggccaggttaacggt
cccgatgatggtctccacaacggcggagtggaagattctgtggtcaaagccagtcagctg
ttggcagaactcaattttgaggaagatgaagaagacgcctactacaccaaggacctgccc
gtgcatgcttgcagctattgtggcattcacgatccagcctgtgtggtgtactgcaacacc
agcaagaagtggttctgcaatggccgtggaaatacatctggcagccacatcgtgaaccac
ttggtgcgagccaaatgcaaagaggtgacacttcacaaagatggacccttgggagagacc
gtcctggagtgttacaactgcgggtgtcgtaatgtcttcctcctgggtttcatccctgcc
aaggctgattctgtcgtagtgctgctctgtaggcaaccttgtgccagccagagtagcctg
aaagacatcaactgggatagctcccagtggcagccgctgatccaagaccgttgctttctc
tcgtggctggtgaagatcccgtcggagcaagagcagctgcgtgcccggcagatcactgcc
caacagatcaacaagctggaggaactctggaaggacaaccccactgccaccttggaggac
ttggagaagcctggtgtcgatgaggagccccaacatgtgttgctgcgctacgaggatgcc
taccagtaccaaaatatttttggccctttggtcaaactggaggcagactatgataagaag
ctcaaggagtctcagacccaagataatataacagtaaggtgggacttgggcctgaataag
aagcggattgcatatttcactctaccgaagaccgattcaggtgacatgcgcttgatgcaa
ggtgatgagatctgcctgcgctacaaaggtgacctggccccgctttggaaagggatcggc
catgtcatcaaggtccctgacaactacggggatgaaattgcaattgaactgcggagcagc
gttggagcccctgtggaaattccacataacttccaggtggactttgtgtggaaggccact
tcgtttgacagaatgcagagtgctctgaagacctttgccgtggatgaaacctcagtgtca
ggttacatttaccacaagctcctgggtcacgaagtggaagatgttaccatcaagtgtcag
ctgcccaagcgcttcactgcccagggcctacctgatctcaatcactcacaggtgtacgct
gtgaaaacggtgttgcagaggcctctcagcctcatccagggtcctcctggcactggcaag
actgtcacctcggccactattgtctaccacctgtcgcgtcagggcaacggaccagtcctg
gtgtgcgctcccagtaacattgcagtggaccagttgaccgagaagattgacaagactggc
ctcaaggtggtcaggctgtgcgcgaagagccgtgaagctatcgagtcaccagtgtctttc
ctggcattgcataatcagatcagcaatatggacagcatgccagaacttcagaaacttcag
cagctgaaggatgagaccggcgaactgtcttctgccgacgagaagcgctatcgagctttg
aaacgcaccgctgagagggagctgctcatgaacgctgatgtcatctgctgcacctgcgtt
ggtgcaggggaccctcgcctggccaagatgcagtttcgctccatcctgattgacgagagc
acccaggccaccgagcccgagtgtatggtgcctgttgtgctaggagcaaagcagctcata
ctggtgggtgatcactgccagcttggtcctgtggtgatgtgtaagaaggcagccaaagca
gggttgtcccagtccctgtttgagcgcctggtggttctggggatccggccaattcgcctt
caggtccaataccgaatgcatccggctctcagcgccttcccgtctaacatcttctacgag
ggctccttgcagaatggcgtcacggcagctgaccgcatcaagaagggctttgacttccag
tggccacagccggacaaaccaatgttcttttatgtgacacaaggccaggaggaaattgct
agctctggaacttcctacctgaacaggactgaggctgcaaatgtggagaagatcaccacc
aggctgttgaaggcgggtgccaagcctgaccagattgggatcatcaccccgtatgagggt
cagcgttcgtacctggtccaatacatgcagttcagtggctctctgcacactaaactctat
cagcaagtggagattgcaagtgtggacgccttccaaggcagagagaaagactttatcatc
ctgtcttgcgttcgcgctaacgagcaccagggcatcggctttttgaatgatccgcggcgt
cttaacgtggctttgaccagagccaaatatggagtgattatcgtggggaaccccaaagcg
ctttcgaagcagccgctgtggaacaacctgctgaacaattacaaagagcagaaggtcctg
gtggagggacccctgaacaacctgagggagagtctcatgcagttcagcaagccacgcaag
ctggtcaacaccatcaatcctggtggacgtttcatgagcactgcgatgtatgatgcccgt
gaagctctcatccctggctctgcttatgaccgcagtaatactgtcggtcgcccgtcaaac
atgtacttccaaactcacgaccagatcgggatgatcggggcaggcccaggccacatggct
gccatgaatctcccgattcccttcaacctggtgatgccccccatgcctccgccaagctac
ttgggccaaactaacggccccgctacaggccgtggagctatgaaaggaaataagccaggg
cgcggtgggcgccagaggccccgtggttcagcagcccaaggtgccactcatggaccaaac
agccaagccagccaggatggggcctcacagtccttctcacaggggccactgactcaaggc
tacatctccatgagccagccttcccagatgagtcagcctggtctctcccagcctgaactg
tctcaggacagttacttgggtgacgagttcaagtcccagatcgatgtggctttgtcccag
gactcgacttaccagggcgaacgtgcataccagcatggtggggtgactggcctgtcacag
tactag
DBGET
integrated database retrieval system
