Syngnathus scovelli (Gulf pipefish): 125977560
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Entry
125977560 CDS
T08785
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6 isoform X1
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sscv03036
]
125977560
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
125977560
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
BRK
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
125977560
NCBI-ProteinID:
XP_049590172
LinkDB
All DBs
Position
Unknown
AA seq
3078 aa
AA seq
DB search
MKIHKKDKQQQTLGGLPKHAPLASASSPPPEQTSGAQISLPAIPRAHLLVGSKDQLRLLA
PVGSLSNHCKAPALVVAATPRPPSSLSEEDDDGGGAVGRVRKKRKKKDKRERAEGDNRAS
VKKRKQAREVPVVTVLPNKRKESRTKGRGDTTPDDRAELKHDAGRKNASAPTAVPVPSEV
PVKVPGKRGRKPKIKILPPHPPHQATPAPASAPPPKPLSGLKSNLYSAPKQRARKPRDAS
AAPVERKKKAKRRKQMAALPEGAESDDTTSLSVNTGGEDSQDPMDNAKRRSGRQVKRRKY
NEDLDLKVVDDDGETIAVLGAGRIAALSATALAWQAEEPPEDEANIIEKILSVRPVKKEQ
TSSLEDQADEMEEFYVKYRNFSYLHCKWATLGELEKDPRIHQKIKRFRTKRAQMKHLFSE
PDEDLFNPDYVEVDRVLEVAVTTDTETGEEVTHYLVKWCSLSYEEATWELQEDLDPEKIK
EFEEIQKLPPDLRHLERPPPDKWQKLERSRDYRNGNQLREYQLEGMNWLLFNWYNRKNCI
LADEMGLGKTIQSITFLYEMFSMGIRGPFLIIAPLSTITNWEREFRTWTRMNVIVYHGSQ
ISRQMILQYEMFHRKAQGTAAPSVLKFHALITTFEMVMADCPELKKLQWRCVVIDEAHRL
KNRNCKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNFLEPLQFPSESAFLDEFGDLK
TEEQVKKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVELTNMQKKYYRAILEKNFSFLS
KGANQHNMPNLINTMMELRKCCNHPYLITGAEEKILESFRKSHGADACDLQLQAMIQAAG
KLVLIDKLLPKLLSGGHKVLVFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAID
RFCKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVK
VYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGGLNGVQQLSKLELEDLLKKGAYGA
LMDEEDEGSKFCEEDIDQILQRRTQTITIQSEGKGSTFAKASFVSSGNRTDISLDDPNFW
QKWAKIAEVEIDSKSEKESLVIDTPRVRKQTRHYNSFEDDELMEFSELDSDSEEKPCRTR
RLGERSRRYLRAECFRVEKNLLIFGWGRWKDILHHGRFKWHLTERDMEAICRALLVYSLK
HYKGDDKIKSFIWDLISPSKEGQDQDQELLNHSGLSAPVPRGRKGNRPKSPLTVPELKNA
DWLAHCNPEVVLQDDSYKKHLKQHCNKVLLRVRMLYYLKVEVLGEAANQALEGTPASKLD
VSLPDIDYIEIPASWWDADADKSLLVGVHKHGYERYNAMRADTDLCFLERVGMPDVTTLS
TEQGGGEPAANAADSIVKVDVSENVNSQSEGGDDNDKGEESRLSTASADKPDGGAAAPDS
HAAAADLCAQDATLVTTMFDGVVGSGTGVAALHVVHARPLWPTGPALTARLRRLITAYQR
FTLRREPPLRPDFLLHDGLAALGVGAGSAGGAPLGHHAGGALAWQLGEELRRCSASHAES
DAVFMEWQRRWSRREQMDFYRTVSSFGVAFDPERKTFDWSQFRVLARLERKTDDSLERYF
NSFVSMCRTSCKLPPRKEEGLTDAAIPVEPLTEERAARTLYRIELLRKIREQVLRHPLLS
ARLQLCRPSLYLPVWWESGKHDRDLLVGAARHGLSRTDFYILNDPQLSFLEAHRNYVRGH
HASHLHRLPPPHCCLYDAVQPPDYPQQAAQQVTIPSAPSSSSSSHLRAPPPPTLDEATAT
GLGMVSTSRGDFLDCPPLDESLADLDPMSAEALHGAKASKDALNGFPFNSAAGGQRMLNP
YGRLGGADLCSELRSDVLVGEQGSSEETGLLAPSVELDRLQAPWDGTDHSSPAHHMFNES
DPILGPTGFLEEDEESGRGDGTADGTLEECLGLPPPSSPSHPSAADSVESSSFLLFKDIG
VNEEAGVEQNDLAASPLPPYIPPHTPLSSPDIVGHREEDVGSQNADGGASEGPGRGGFRF
DGKCQDVGTEKDGLLLDPHKGIGTSGCKKARLVASPSTYEAVLPNLRLPLDLAHMGAGEP
PSSALRDPVDGMEVPNQLICPMEEVDTLMFAEEEEEEENDDEEHTSVTDLMTGAHGALLQ
EDGCLSGQPIAERTADGFCLLDDTTADQRGEPAAPPSEEKSELRIKTEDQDLETSTVKSE
VGVRPVGESVEQDALQPTAGGRPQETEPGALDSNDSGQNFVEAKRERPGRLRGQPKDNDM
PSSPVTAAEDYSRSPGFTAPFTVCESPEIHDAREPTIAQLLQEKALYSYSDWPKDRVIIN
RLDSICHAILKGKWPSASDQYDSPASVCANHLARQQLQRTAFNPGPAFPIIPPPLARLPK
YSGRGGGRGAWRLTSLPFLQERLVAPGFLPELKRSGGRHSFDYEAAPTAKTLAGKAAASR
TPGVDAPPTNLLMNGWQEAAMDLSKSPGSLASGSGDAARKVPPPITAPLPGSAAMDMAGI
LQAGLIHPVTGQIVNGTLRGDDCLRRRRGRRRNVEALYSEFTKAQAMRLPDTAQGHAEAL
SPSAAAPSTSAQSASSSECPVAAPPMTSSAPTSASTPPRPEAAAMEREGTAGKGLMEWLR
HKPGYSLDLPLVHVGTGVLHGLVERPKQRRHRCKDPTKLDVNSLTGEERVPVVHRATGRR
LGGAMAPAIKELSRWLDANSEYFVAPDWADVVKHSGFLPEGKFSRILTEPVNRDPSSRRR
GRRPRSEMPKPLPSDASGPPPPIFMNGALMSGVDSVVAMQNLRSGMPGIPISSIMAAGFP
HVFPAGVGGASAEDAKNGLSMLPMMLHGVPPSPRGAAVPQHALFSVMPLHSPSSASPAAK
AAASAAEMGGDASAASAEAAPSQGQNKCDPHTSGHLTFNPFLIPGVSHGLLYPHMFVPHG
GIMALPAVPHGTSANDASPGSPKRRRRRERDESERAPLRQKPDLLQEPEPQPRRESELQE
GAECRQESKHCKDLDLRLETEEEQQRSEEPQPQAERSPSVPVPSLSPTQEAHCHQRPAGE
PRDPERGARQAERQEQGV
NT seq
9237 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatccacaaaaaggacaagcagcagcagacgttgggcggccttccaaagcacgcg
ccgctggcgtcagcttcgtcgccgccgccggagcagaccagcggtgcgcagatttcgctg
cctgccatccccagggcccacctcctggtgggctctaaggaccagctccggcttctggcc
cctgtgggcagcttgtccaaccactgcaaggcccccgccctggtagtggcggcgaccccg
agacccccctcttccctgagcgaggaggatgacgatggcggcggggccgtcggcagggtg
aggaagaaacggaagaaaaaggacaaacgggagcgggcggagggcgacaacagagcctcg
gtgaagaagcgcaagcaggccagggaggtgcccgtcgtcactgtgcttccaaataagagg
aaggagagcagaaccaaagggaggggggacaccacgccggacgaccgggctgagctcaag
cacgacgccgggcggaaaaacgcctctgcccccacagccgtgccggttccctcagaggtg
cctgttaaggtgcctggaaaacgtgggaggaaacccaagatcaaaatcctgccccctcat
ccccctcatcaagccacacctgctccagcctcagccccgccccctaagcccctatccggc
ctcaagtccaacctctactctgcgcctaagcagagggcccgcaaacccagagatgctagc
gccgccccggtggagaggaagaagaaggccaaaaggagaaagcagatggcggcgctcccc
gagggggccgagagtgacgacaccacctcgctgtcggtcaacacgggcggagaggacagc
caggaccctatggacaacgcgaagcggcgctcagggcgtcaagtgaaacgccggaagtac
aacgaggatttggacctgaaggtggtggacgacgacggagagaccattgccgtgctggga
gcgggacgcatcgcagcgctcagtgctacggcgctggcctggcaagctgaggagccgccc
gaggatgaggccaacattatcgagaaaatcctgtcggtgcgaccagtcaagaaagagcag
acgtcgtcgctggaggaccaagccgacgagatggaagagttttacgtcaaataccgaaac
ttttcgtacctgcattgcaagtgggccacgctaggtgagctggagaaagatcccagaatc
caccagaagatcaaacgcttcaggaccaagcgggcgcagatgaagcaccttttcagcgag
cctgacgaggatttgtttaatcccgactacgtggaggtggacagggtgctggaggtggcc
gttaccacggacacggagaccggagaggaggtgacgcactacctggtcaagtggtgcagc
ctgtcctatgaagaggccacctgggagctccaggaggacttggaccctgagaaaatcaaa
gagtttgaggagattcaaaagctgccgccagacttgcgacatctggagcgtcctcccccg
gacaaatggcagaagttggagcgctcacgagattaccgcaatgggaaccagctgagagag
taccagctggagggcatgaactggttgctcttcaactggtacaacaggaagaactgcatc
ctggcggatgaaatgggcctgggcaagaccatccagtccatcaccttcttgtacgagatg
ttcagcatgggcatccgggggcctttcctgatcatcgcgcccctctccaccatcaccaac
tgggagcgcgagttccgcacctggacgcgcatgaacgtcatcgtgtaccacggctcgcag
atcagccgccagatgattctgcagtacgagatgttccatcgcaaagcgcagggcactgcg
gcgccgagcgtgctcaaatttcatgcgctgatcaccaccttcgagatggtgatggctgac
tgccccgagctgaagaagctgcagtggcgctgcgtggtcatcgatgaggcgcaccgcctc
aagaacaggaactgcaagctgctggaaggactcaaactcatgaacttggagcacaaggtt
ctgctgacgggaacgccgctgcagaactcggtggaggagttgttcagcttgctcaacttc
ctggagccgctgcagttcccctcggagagcgccttcctcgacgagtttggggacctgaaa
accgaggagcaggtgaagaagcttcaggctatcttgaagcccatgatgctgaggaggttg
aaggacgacgtggagaagaacctggcccccaaagaggagaccatcattgaggtggagctg
accaacatgcagaagaaatactaccgggcgattctggagaagaacttctccttcctgtcc
aaaggagccaaccagcacaacatgcccaacctcatcaacaccatgatggagctgcgcaag
tgctgcaaccatccttacctgatcaccggggccgaggagaagatcctggagagcttccgc
aagagtcacggggccgacgcctgcgacttgcagctgcaggcaatgatacaggcggctggc
aagctagtgctcattgacaagctgctgcccaaactgctgagcggtggacacaaggtcctg
gtcttctcgcagatggtccgctgcctcgacatcctcgaggactacctcatacagagacgc
tacacgtacgagcgcatcgacggacgcgtccgcggcaacttgcgtcaggcggccattgac
cgcttctgcaagccggactcggaccgctttgtcttcctgctgtgcacgcgggcgggcggc
ctgggcatcaacctgacggctgccgacacctgtatcatctttgactcggattggaacccg
cagaacgacttgcaggctcaggcgcgctgccaccgcatcggccagagcaaagcggtcaag
gtgtaccgcctcatcaccaggaactcctacgagcgagagatgtttgacaaggccagcctc
aagctgggcctggacaaggccgtcctccaggacatcaaccgcaagggcggcctcaacggg
gtgcagcagctgtccaagctggagctggaggacttgctgaagaaaggcgcctacggtgct
ctgatggacgaagaggacgaaggctccaagttctgcgaggaggacatcgaccagatcctg
cagagacgtacgcagaccatcaccatccagtcggaaggcaaagggtccacctttgccaag
gccagctttgtctcctcgggtaaccgcacagacatctctcttgacgaccccaacttctgg
cagaagtgggccaagatcgccgaagtggagatcgactccaagtcggagaaggagtcgctg
gtgattgacacgccccgcgtcaggaagcagacgcgccactacaattccttcgaggacgac
gagctaatggagttctcggagctggacagcgactctgaggagaagccgtgccgcacccgc
cgcctgggggagcgcagccgccgctacctgcgtgccgagtgcttccgcgtggagaagaac
ctgctcatctttgggtggggccgctggaaggacatcctccaccacggtcgcttcaagtgg
cacctgaccgagagagacatggaggccatctgcagggctctgctggtttacagtctgaag
cactacaaaggtgacgacaagatcaagagcttcatctgggatctgatctcccccagcaag
gagggccaggaccaggaccaagagctgctcaaccactccggtctgtcggctccggttcct
cgtggacgcaagggcaacagacccaagagtccgctgactgttcccgagctgaagaatgcc
gactggctggcccactgcaaccccgaagtggttctgcaggacgacagctacaagaaacat
ctcaaacagcattgcaacaaggttctactgagggtgaggatgttgtactacctgaaggta
gaggttctgggtgaagcagccaatcaggctctggagggcacacccgccagtaagctggac
gtgtcgctgcctgacatcgactacatcgagattccggcgtcgtggtgggatgctgatgcg
gacaagtctttgcttgtaggcgtccataaacacggctacgagcgctacaacgccatgcgg
gctgacaccgacttgtgcttcctggagagggtcggcatgcccgacgtcaccacgctttcc
actgagcagggaggaggagagccagctgccaacgccgccgacagcattgtaaaagtggac
gtcagcgagaacgtaaacagtcaaagtgaaggaggagacgacaacgacaagggagaggag
agccgcttgagcaccgcctccgccgacaagccggacggtggcgctgctgccccagactcg
catgcagcggctgctgacttgtgcgcccaggacgccacgctggtgacgaccatgttcgat
ggggtggtgggaagcggcacgggagtggcggccctccatgtggtccatgcgcgccccctt
tggcccaccggcccggcgctgacagcccgcctgcgccgcctcatcacagcctaccagcgc
ttcacgctgcgccgcgagcccccgctgcgccccgacttcctactccacgatggcctggcg
gcccttggggtgggggccggcagcgcgggaggcgcccctctcgggcaccacgcgggggga
gcactggcttggcagcttggcgaggagttgaggcgatgctccgcctcccacgctgaatca
gacgctgtttttatggagtggcagagaagatggagccggcgcgagcagatggacttttac
cgcacggtgtcgtcctttggcgtggccttcgatcccgagaggaaaaccttcgactggtcg
cagtttcgcgtgctggcgcgactggaaaggaagacggacgacagcttggaaagatacttc
aattccttcgtcagcatgtgtcgcacctcctgcaagctcccgcccaggaaggaggaaggt
ttgacggacgctgccattccagtggagcctctgacagaagagcgagctgctcggacctta
taccgcatcgagcttctccgcaagatccgcgagcaggttctgcgtcacccgctgctgtcg
gcgcgcctgcagctgtgccgcccctcgctctacctccctgtgtggtgggagtcgggcaag
cacgaccgcgatctcctggttggggcggcgcgacacggcctgagtcgcaccgacttctac
atcctcaacgacccgcagctcagcttcctggaggcccaccgcaactacgtgaggggacac
cacgcctcgcatcttcacaggctgccgccccctcactgttgcctgtacgacgcggtccag
cctccagactatccccagcaggccgcccagcaggtcaccattccctctgctccctcgtcg
tcctcctcttctcacctccgcgctccgcctccacctactttggatgaggcgaccgctaca
ggcctgggaatggtttccacctctcggggggacttcctggactgccctccactggacgag
agcctggccgacctggaccccatgtctgcggaagccttgcacggcgccaaggcctctaag
gacgccctgaacggcttccccttcaactcagcggcgggcggtcagagaatgcttaacccg
tatggacgactaggcggggctgatctctgctccgagttgaggagcgacgtgctggtgggt
gagcagggatcgtccgaagagaccgggctgctggcgccgtccgtggagttggatcggctg
caggcgccctgggacgggaccgaccactccagcccagctcaccacatgttcaacgagtcg
gaccccatcttgggtcccacgggcttcctggaggaggacgaggagtctgggcggggcgac
ggcacagccgatgggactctggaagagtgtctgggcctccctcccccgtcttcgccctct
cacccctcggccgcagactccgtagagtcgtccagtttcctgcttttcaaggacattggc
gtgaacgaagaagcaggcgtggagcaaaacgacctggcggcgagcccgctgccgccctac
atccccccgcacaccccgctctcctcccccgacatcgtgggccaccgggaggaggatgtc
gggagccagaacgcagatggaggtgcaagtgaaggcccaggcagaggtggcttccgcttt
gacggcaagtgccaagacgtgggcaccgaaaaagatggccttctgcttgacccgcacaaa
ggtatcggcacgagtggctgcaaaaaagctcggctcgtggcctctccgtcaacgtacgag
gcagttcttccgaatctgcgtctgcctttggacttggcacacatgggtgctggcgagcct
ccgtcgtcggcgttgagggatccggtggacggcatggaggttcccaaccagctcatatgt
cccatggaggaggtggacaccttgatgtttgccgaggaagaagaggaggaggagaacgac
gatgaagagcacaccagcgtgaccgacttgatgaccggggctcacggagcgcttctccaa
gaagacggatgcctcagcggccagcccattgccgagcggacggccgatggcttctgtctt
ctggacgacactacggcggaccagcggggtgagccggcagcgccgccttcagaggagaaa
tcggagctccggatcaagaccgaagaccaggaccttgagacgagcaccgtcaagtcggaa
gtcggagtccgccctgtaggcgaatccgtagaacaggacgccctccagcccacagctgga
gggcgtccacaggaaaccgagccgggtgctctggactcgaacgacagtgggcagaacttt
gtggaggccaagagagagcggccgggccgactcaggggtcagcccaaggacaatgacatg
ccctcttcaccagtgacggcggccgaggactattcccgaagtcccggctttaccgctccc
ttcactgtgtgcgagtcccccgaaatccacgacgcccgggagcccaccattgctcagctg
ctccaggagaaagcgctttactcctattccgactggcccaaggaccgcgtgatcatcaac
cgtttggacagcatctgccacgccattctgaagggcaaatggccttcggccagtgaccag
tacgactcaccggcctcagtctgtgccaaccacttggcccggcagcagctgcagcgcact
gccttcaacccgggcccggccttccctatcataccgcctcctcttgccagactgcccaag
tactcggggcggggcggcggccgcggggcttggcgcctcacctccctccctttcttacag
gagagactggtggcaccgggcttcctccccgaactcaagcgttccggagggcggcactcc
ttcgactatgaagcagcaccaacggctaagaccctagcggggaaggcagcggcgagcagg
acgcctggggtggacgcaccgccgaccaatctcttgatgaacggttggcaggaggcggca
atggatctcagcaagtcgccaggctcactggcttctgggtcaggggacgccgcccgcaag
gtgccgccgcctattacggcgcccctgccaggctcggcggcaatggacatggcgggaatc
ctgcaggctgggcttatccacccagtgacaggacagattgtcaacggaactctgaggggc
gacgactgcctgaggaggagacggggacgcaggagaaacgttgaggcgctctactcggaa
ttcactaaagctcaagccatgcgcctccctgacacagcacagggtcacgccgaggctctg
agcccgtcggcggcggcgccatccacgtcagctcagtcagcctcatcctcagagtgtccg
gtggcggcaccgcctatgacatcgtccgcacccacttcggcgtccacgccgccccgcccc
gaggcggcagccatggagcgggaggggaccgccggcaaagggttgatggagtggctgcga
cacaaaccgggatacagcttggaccttcctttggttcatgttggcacgggggtgttgcac
ggtttggtggagcggcccaagcagcggcgccaccgttgcaaagatcctaccaagctagac
gtcaactccctgacaggggaggagcgcgtgcccgtagtgcaccgcgccaccggacgccgg
ctgggtggcgcgatggctccagccatcaaggagctgtcccgctggttggatgccaactca
gagtattttgtggctccagactgggcggacgtggtcaaacattctggtttcctcccagag
ggaaagttctcccgcatcctgacagaaccggtcaaccgagacccctcgtcgcgccgtcgc
ggccgccgcccacgcagtgagatgcccaaacccctcccgtcagatgcctcgggcccgccg
ccacccatcttcatgaacggagccctgatgagcggcgtcgactcagtggtggccatgcaa
aacctgcgcagcgggatgcccggcatccctatctccagcatcatggcggcgggtttccct
cacgtttttccggcgggcgtgggcggggcgtcggccgaggatgccaagaacggcttgagc
atgttacccatgatgctgcacggcgtgccgccatccccccgcggggccgccgtcccgcaa
catgcactgttcagtgtcatgccgctgcactcaccctcctccgcctcgccggccgcgaaa
gctgccgccagcgcggcagagatgggcggcgacgcctcggccgcatccgccgaggctgcc
ccttcccagggccagaataagtgcgacccacatacaagcggccatctgactttcaacccc
ttcctgatacccggcgtgtcgcacggcctgctctacccgcatatgtttgtaccacacggt
ggcatcatggcgctgcccgccgtgccacacggcacgtctgctaacgacgcctccccgggg
agccccaagaggaggcgccggcgagagcgggacgagtcggagcgggcccctctgcgccag
aagcctgatttgctccaggagccagaaccgcagccgcgccgggagtcagaactccaggag
ggagcggaatgccgtcaggagtcgaaacattgcaaggacctggatctgcgcctggagacg
gaagaggagcagcagcgcagcgaggagccacagccgcaggccgagcggagcccttctgtc
ccggtgccctcgctgtccccgacacaagaagcgcactgccatcagaggcctgcgggagag
ccacgtgacccagaaaggggagcaagacaagcggaaagacaggagcagggcgtctaa
DBGET
integrated database retrieval system
