Syngnathus scovelli (Gulf pipefish): 125977599
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Entry
125977599 CDS
T08785
Name
(RefSeq) tRNA-splicing endonuclease subunit Sen2 isoform X1
KO
K15322
tRNA-splicing endonuclease subunit Sen2 [EC:
4.6.1.16
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sscv03016
]
125977599
Enzymes [BR:
sscv01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
125977599
Transfer RNA biogenesis [BR:
sscv03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing endonuclease complex
125977599
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Motif
Other DBs
NCBI-GeneID:
125977599
NCBI-ProteinID:
XP_049590311
LinkDB
All DBs
Position
Unknown
AA seq
393 aa
AA seq
DB search
MFQADFRPPRGRCRVDEEYVTPLPVSRSSSQTTGVKSPTRTSRFRADLVNRHVLVTEPEH
IRDLHNQGYFGKGILSRARPEHGVSDRWQQHEGFLLPVVTQARYEELLRRAESSLLAQGL
AQVVVNQTLLWLRQPIRADVLRRQAEDGEAARSDTLANLRSEPGRSMLRELGPASSPDLR
PDRGAKSEPDDAPLVPGPGFVIIDAGHVAAQLRRNPLRMTEFLELGPEEAFFLVYGLGCL
SVHEQQAPLSITELWRHLVALRPDFVSSYAAYHHFRSRGWVPKGGSGAKYGVDMLLYRKG
PPFYHASYSVMVEKVDERFQGSALRALSWRSLATLSRITANVSKELLLCYVTHPADLSEA
ELDSPACLSKLKVQNIMVSRWVSSKERAEQEDV
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaggctgactttcggccgccccgggggcgctgccgggtggacgaagagtacgtg
acgccgctccctgtgagccgaagctcgtcgcagacaacaggagtgaaaagcccgacgagg
acgagccgcttccgggcggacctcgtcaaccgacacgtgctggtcaccgagcccgagcat
atccgcgaccttcacaatcagggctattttgggaaaggcatcctgtccagagccagaccg
gagcacggagtctccgaccggtggcagcaacatgagggcttcttacttccggtggtcaca
caggccaggtacgaggagctgctcaggcgggccgagtcctcgctcctggctcagggcttg
gctcaagtggtcgtcaatcaaacgctgctatggctgcgtcagcccatccgagcggacgtg
ctgaggcggcaggcggaggacggggaggcggcccgatcggacacgctggccaacctccgt
tctgaacctggtcggagcatgctgcgtgagcttggcccagcctcgagcccagacctcaga
cctgaccgaggagctaaatctgagcctgatgatgctcctttagttccggggcccggtttt
gttatcattgatgccgggcacgttgctgcgcagctcagacgaaatcctttacggatgaca
gaattcctggaactcggcccggaggaggctttcttcctggtctacggcctgggctgcctg
tctgtccatgagcagcaggcgccgctgtcaatcaccgagctgtggaggcacttggtggct
ttgcgcccagactttgtcagctcctacgcggcctaccatcactttcgcagcaggggttgg
gtccccaaaggaggaagtggcgccaagtacggcgtggacatgctcttgtacaggaaaggt
cctcccttctaccacgccagctattcggtgatggtggaaaaagtggatgaacgttttcag
ggttcagcgctgcgtgccttatcctggcgttctctggcgactttgagcaggatcaccgca
aatgtctccaaggagctgctactgtgttacgtgacccatccagctgacctgtcagaagct
gagctggactcgcctgcctgtctgagcaagctgaaggttcagaacatcatggtcagcagg
tgggtttcctccaaagaacgtgctgagcaagaagacgtctga
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