Syngnathus scovelli (Gulf pipefish): 125985151
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Entry
125985151 CDS
T08785
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03013
Nucleocytoplasmic transport
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125985151
09122 Translation
03013 Nucleocytoplasmic transport
125985151
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125985151
03041 Spliceosome [BR:
sscv03041
]
125985151
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
125985151
Spliceosome [BR:
sscv03041
]
Complex C
Other components
EJC/TREX
125985151
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
125985151
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
efThoc1
Death
bDLD3
ALIX_LYPXL_bnd
DUF3179
Motif
Other DBs
NCBI-GeneID:
125985151
NCBI-ProteinID:
XP_049603714
LinkDB
All DBs
Position
Unknown
AA seq
655 aa
AA seq
DB search
MSPPLFEFIEAKDKLTESTKQALGDKSSKAIIQAFYHIPGNETEKKTTLDQAFRVVLGEQ
LVGKASSCEAYLSLIYMSIDAVTEGICSATTPFVLLGDVLDSLPLDQCDNIFTFVEENVC
TWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQF
NLENITVFNKNEDESTFTLKHTGEKEDGMEVEEGEMGEEEAPASCSIPIDYNLYRKFWTL
QDYFRNPVQCYDKVSWMTFLKYSDETLAVFKSFKLDDMQASKRKLEELRASGGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSCLLNDDQSAWIEETTKLV
YQLLREIPPDGDKFATMVERILNTEENWIAWKNEGCCSFVKERVVDDKPKRPSRKRAAPE
DFLGKGPDRKIFMGNDELTRLWNLNLDNMEACKSDSREFMPSLDEFFAEAIEQADPANMV
EEEYKVVRNPNYGWRALRLLSRRSPHFFQPINQKFNSLADYLDTMVSKLAKELPKDIPSE
EIKTGEEEDDDENGDNLLKDSNDSPSMPSKMVSNQQMDDVAAKLGNRWKSLASYLEMRAA
ELREIEAESEDADIRAKLLLVTWQDREGAQATVESLVAALNAAGFAKMADELSEA
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcctcccttgtttgaatttattgaagcaaaagacaagctcacggaatccaccaag
caggcgctgggcgacaaaagcagcaaagcaataatacaagctttttatcacatcccagga
aatgagactgaaaagaagaccacactggaccaggcttttcgggtggtcctcggggagcag
cttgtgggcaaggcgtcgagttgtgaggcctacttgtctcttatctacatgagcatcgat
gcagtcactgaaggtatttgctccgcgactacgcctttcgtgctgctgggggacgtgctg
gacagtcttcctctggatcagtgtgacaacatcttcacctttgtggaggagaacgtttgc
acgtggaaatctaactcattctacacagctggtaaaaactacttgttgaggatgtgtaat
gatctcctacggcgtctgtccaagtcccagaacacagtattctgtggacggatacaactc
ttcttggctcgtctcttcccgctgtcagaaaaatccggtttgaatctccagagtcagttc
aacctggagaacatcacagtgttcaacaaaaatgaagacgaaagcacctttacgctcaag
cacacaggagagaaggaggacggaatggaggtggaggaaggggaaatgggcgaggaagaa
gcacctgcgtcgtgctccatccccatcgactacaacctctacagaaagttctggacgctg
caggactacttccgcaaccctgtgcagtgctacgacaaagtttcctggatgaccttcctc
aagtactcggacgaaacgctggccgtgttcaagagcttcaagctggacgacatgcaggcg
tccaagaggaaactggaagaactgcgggcgtctggcggcgagcacgtctattttgccaag
ttcctcaccagtgaaaagctgatggacttgcagctgagcgatagcaacttccgccgacac
attctgctgcagtacttgatcctcttccagtacctgaaaggacaagtcaaattcaaaagc
tccagctgcttgctaaacgacgaccagtctgcgtggatcgaagaaaccaccaagttagtt
taccagcttctcagagagattcctccagatggggacaagttcgccaccatggtggaacgt
atcctcaacactgaagaaaactggatagcttggaaaaacgaaggatgttgcagctttgtc
aaagagcgggtggtcgacgacaaacccaagcggcccagcaggaaacgagcggctccagaa
gacttcctggggaaaggtcccgacagaaagatcttcatgggaaatgatgagcttactcgg
ctatggaacttgaacttggacaacatggaagcctgcaagtcagatagcagggagttcatg
ccgtcgctggatgaattctttgctgaagccatcgagcaggccgaccctgccaacatggtg
gaggaagagtacaaggttgttcggaaccccaactacggctggcgggctttacggctgctc
tccagaagaagtccacacttttttcagcccatcaaccagaagttcaacagcctggccgac
tacttagacaccatggtcagcaagctggccaaggagttgcctaaggacatcccctcggag
gagatcaagacgggtgaggaagaggatgatgacgaaaatggagacaatctgctcaaagac
agcaatgacagcccgagcatgccgagcaagatggtgagcaaccagcagatggacgacgtg
gcggccaagctcggcaaccgctggaagtcactggcctcgtacttggagatgcgggcagct
gagcttcgcgagatcgaggcagagagcgaggacgccgacatccgggccaagctgctgctg
gtcacctggcaggatcgagaaggggcacaagccacagtggagagcctggtggcggccctt
aacgccgccggcttcgccaaaatggcggacgaactcagcgaggcttga
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