Syngnathus scovelli (Gulf pipefish): 125985492
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Entry
125985492 CDS
T08785
Name
(RefSeq) collagen alpha-4(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04510
Focal adhesion
sscv04512
ECM-receptor interaction
sscv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125985492
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125985492
09142 Cell motility
04820 Cytoskeleton in muscle cells
125985492
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sscv04147
]
125985492
00536 Glycosaminoglycan binding proteins [BR:
sscv00536
]
125985492
Exosome [BR:
sscv04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
125985492
Glycosaminoglycan binding proteins [BR:
sscv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125985492
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
125985492
NCBI-ProteinID:
XP_049604356
LinkDB
All DBs
Position
Unknown
AA seq
1677 aa
AA seq
DB search
MQHSKMSSSCAALTWCALRWLLVLLVIAQHLNAGNVEGPCDGRDCSVCQCLPAKGARGPP
GKSGKQGPRGQMGSWGSVGPPGEKGRLGSPGSPGPEGLKGARGNTGPPGFPGHEGSLGHP
GAGGEPGLPGVDGCAGAPGQPGVPGFPGLDGLHGPPGFPGPKGVKGEPLYTDSIPGLPGD
PGRQGDAGLPGQNGVAGPKGYTGAHGPPGDQGSRGYKGLRGPAGDPGRPQPGAAGDDGEQ
GPPGPQGPEEIIEPTPGYLAPKGYKGDRGRPGPCGPKGKKGGQGDFFSQGMKGEEGILGF
PGLRGFQGSPGISGPVGPEGLPGERGLPGLIGTPGPKGDHGDRGFPGPTTYLKGSPLRGA
KGEKGYPGNPGLEGDPGLMGTRGPPGPKGLTYTDGLSVPGPSGPPGPKGFKGEPGGLINP
VPGPKGRKGIRGRKGVIGVRGPPGCGGYICEPGHPGDPGDNGPRGPPGIKGFKGLKGCEG
ACNCTFSHGPPGPPGQPGFPGPPGLPGTPGMKGDPGLKGEEGPAGPHGFKGYLGLKGLKG
QKGDGFITTDKGAKGNQGDTGYPGSPGQLGKPGIDGLPGLPGIPGPPGSSYRGKPGPKGD
PGTGGPKGLPGSLGLPGPGFPGPQGPAGLKGDHGYPGSPGIPGRKGPPGDPAVCCHENAT
GSPGVKGEPGSPGFPGEPGRDGIVGPPGHPGRKGMKGDDGGIEGIGPPGPQGINGDHGDP
GSRGKSLDGPPGAPGVPGPSGRKGSPGDVFNTLPGPPGHPGQPGVRGRKGIPGSPGSPGF
TGVQGPPGRPGRKGEQGFDGDRGAPGPPGSRCTIWESTGPPGPPGPPGNPGPRVTGIPGP
KGSQGDNGLPGHGAMGPPGRSGPPGIPGPAGPRGSAGPPGDFGNDGWPGHKGELGLPGRD
GAKGLPGPPGPPGPRGKQGERGFDGPLGSRGETGYPGMKGIRGPRGLPGEEKLEILKKGE
PGTPGRRGQPGLPGPTGEKGQRGRQGVPGPDGFPGSQGFKGDAGVPGRHGIPGNPGHPGL
KGFIGPRGYSGNDGDPGEPGSQGQPGLPGVPGFSGAKGEPGESFGHPGSPGPKGAKGEKG
FSVPIGDPGDPGDPGPRGYPGTPGQPGTPGDPGIHGGPGFPGPIGPSGSPGLPGVQGDSG
YVGSLGPPGPTGPSGLPGPPGLSGLDGLRGPRGMKGASGVTIPGHPGPDGYPGAKGSKGL
PGPPGPSYPGPKGLRGPPGDSGPDGSLGEPGYLGRECDKPLPGPVGDPGSEGAPGPQGPA
GPKGEAGSLFFHKGDPGPPGLPGLPGQKGDKGYPGNQGTPSYPGFPGPKGERGLPGSRGF
DGAKGPRGDPGPSGRKGVTGPAGDVGAKGVPGDSFTEPIRKAPDGPPGPPGYPGPIGLPG
APGSPGHNGLKGPKGRTGSQGITGPPGPPGIDGSIGDVGDFGEPGFVGPQGTPGPRGDPG
APGYARTSSSGFLLVLHSQSVQVPQCPDGTSQLWVGYSLAYLEGQEKAHTQDLGQAGSCL
PVFSTMPFSYCNKAACHYSARNDKSYWLSTTAAIPMMPLFGYEIRSHISRCVVCETRLPA
VAFHSQDPSIPQCPPGWRSLWTGFSFLLETGAGDEGGGQSLTSPGSCLKDFRTHPIIECQ
GARGSCHYFANLYSFWLTAIRHTDQFVKPKPGTIKAAGEQRRKASQCQVCLRQYSTF
NT seq
5034 nt
NT seq
+upstream
nt +downstream
nt
atgcagcattccaagatgagctcttcatgtgcagctttgacatggtgtgccctcaggtgg
ctccttgtcctgcttgtcattgcacagcatcttaacgcgggaaatgttgaaggtccatgt
gatggcagagactgttctgtatgtcagtgtcttcctgccaaaggtgcacggggacctcca
gggaaatcagggaagcaaggacctcgcgggcaaatgggatcatggggcagtgtggggcca
cctggagagaaaggcaggctgggctcaccgggatcaccaggcccggaaggacttaaagga
gcccggggcaacactgggcctccaggttttcctggtcacgaaggttcattgggtcaccct
ggagcaggcggtgagcccggtttgcctggagtggatggctgtgcgggggctccgggtcaa
cctggtgtccccggttttcctggcctggatggtctgcatgggccacctggatttcccgga
ccaaaaggagttaagggagaacccttatacactgattccattcctggacttcctggagat
cccggtcgacaaggagatgcgggtctacctggccaaaacggggtcgccggaccaaaaggc
tacacaggtgctcatggtccacctggtgatcagggctcaagagggtataaaggtctccga
ggaccagcgggtgaccctggaagaccacagccaggcgcagcaggagatgatggtgaacaa
ggcccacccggtccacaaggaccagaagaaatcattgagccgaccccgggttacctcgca
ccaaaaggttacaagggagaccgaggtcgtcctggaccatgtggaccaaagggcaaaaaa
ggtggtcaaggagacttcttcagtcaaggaatgaaaggagaggaaggaattcttggtttt
cctggacttcggggttttcagggatcacctggaatttcaggaccagtgggacctgagggg
ttgccaggcgaaagggggcttccgggtcttatcggaacacctggaccaaagggcgaccat
ggagatcgggggtttcctggtcctacgacgtatttgaaagggtctcctcttcgaggagca
aaaggggaaaagggatatcctggaaatcctggattagagggtgatcccggattaatgggc
acacgtggccctcctggcccaaaaggactaacgtatacagatgggctgagtgtgcctggt
ccaagcggacccccgggtcctaagggctttaaaggagagccaggtggcttaatcaatcca
gtcccaggaccaaaaggaagaaaaggaatacgcgggcgtaaaggtgttatcggagttcgc
ggtcctccaggatgtgggggctacatttgtgagcctggtcacccaggtgaccctggtgat
aatggaccccgaggacctcctggaataaaaggcttcaaaggacttaagggctgtgaaggg
gcttgtaattgtacgttttctcatggaccgcctggtccccctggtcagcctggttttcca
ggacctccaggattaccaggaactccagggatgaagggggacccaggactaaaaggagaa
gagggtcctgctggacctcatggttttaaaggatacctaggtttaaaagggctaaagggc
caaaagggggatggctttatcacaacagataaaggtgcaaagggaaaccaaggagacact
ggatatcctggttctcctggccaactgggtaaaccaggaatcgatggtcttcctgggctg
ccaggaatccctggaccaccaggttccagttacagaggtaaacctggtcccaaaggagac
ccagggacaggtggtcccaaaggtttgccaggcagtctggggctcccaggtcctggtttt
ccaggtccccagggtccagcaggactgaaaggtgatcacgggtacccgggctccccagga
attcccggtcgaaagggcccgccaggcgaccctgcagtctgttgtcatgagaatgcgacg
ggatcacctggtgttaagggagaacctggttccccaggctttccaggtgaacccggaagg
gacggaattgtaggacccccgggacatccaggacggaaaggcatgaaaggagatgatggt
ggaattgaagggattggacctccagggccacaaggtataaatggagatcatggtgaccct
ggtagtcgtgggaaaagcctcgatggtcccccaggcgctcccggagtaccgggaccatca
gggaggaaagggtcccctggagatgtgttcaatactttgccaggtcctcctggtcatcca
ggccaacctggagttagagggagaaaggggattcctggcagtccaggaagcccagggttt
acaggtgtacaagggccacctggaaggccaggtcgaaaaggagaacaaggatttgatggt
gatcgtggagctcccggacctccaggctcgcgatgtacaatatgggagtcaacaggacct
cctggaccacctggtcctccaggaaaccctggaccaagagtgacaggtatccctggtcca
aaaggctcacagggagataatggcctaccgggtcatggcgccatgggtccaccgggtcgc
agtggtcctcctggtataccgggcccagcagggccgagaggctctgctggtcctccggga
gattttgggaatgacggttggccaggacacaaaggtgagttgggcttacctggcagggat
ggggccaaaggcttaccaggcccgccgggacctccaggtccaagaggcaagcagggggaa
agaggctttgatggtccactaggtagccgaggagaaacaggatatcctggtatgaaagga
atacgtggtcccagaggattacccggggaagaaaaacttgagattttaaaaaagggagaa
ccaggaactccaggaagaagagggcagccaggtctaccaggaccaacaggtgaaaagggg
caaagagggaggcaaggcgttccaggaccagatggcttccctggttcacaaggatttaaa
ggtgatgctggtgtacctggaagacatgggatacctggaaatcctgggcaccctggattg
aaaggttttattggaccaaggggatacagtgggaatgatggagatccgggagaaccagga
tcacagggacaaccaggacttccaggggttccaggattttcaggtgccaaaggtgaaccc
ggagagtcttttggacatcccggaagccccggacccaaaggagctaaaggggagaaggga
ttcagtgtaccgattggagatccaggggatccaggggatccaggtccaaggggatatccg
ggaacgcctggacagccgggcactcctggtgatccgggaatacatggtggaccaggtttt
cctgggcctattggtccatcgggtagtccgggtcttccgggtgttcaaggtgatagtggg
tatgtggggtctttgggtccaccaggcccaactggaccctcaggactgcccggtccgccc
ggtctttctggactggatggcctaaggggaccgagagggatgaaaggagcaagtggagta
actatcccaggtcatcctggaccagatggatatcctggagctaagggttccaagggactg
ccggggcctccaggaccctcttatcccgggccaaaaggcctgaggggtccgccaggtgac
tcaggtccagacggttctctaggtgaacctggttatcttgggagagaatgtgacaaacct
ttgccgggacctgtcggagatccaggatctgaaggggctcccggcccgcaagggcctgct
ggaccgaaaggtgaagcaggcagcctctttttccacaagggggatccggggccacccggc
ctacctgggcttccaggccagaaaggagacaagggctatccaggaaatcaaggaactccg
tcatatccaggctttccaggaccaaagggtgagagaggccttcccggttccagaggtttt
gatggagcgaaaggaccgagaggtgatcctgggccttcggggaggaaaggagtaactggc
ccagctggagatgttggtgctaagggtgtccctggtgattcttttactgaacccatacgg
aaggctccagacggccctcctgggccacctggttacccaggacccattgggttgccaggc
gctccgggttcacccgggcataacggactaaaaggaccaaagggtcgaactggttctcag
ggcatcactggacccccaggtcctcctggtattgacggttctattggtgatgtaggagat
tttggtgaaccaggatttgttgggcctcaaggcaccccaggtccacgtggtgacccaggc
gcaccaggttatgcgaggacatcaagctcaggctttctgttggttcttcatagccaatcg
gtacaagtgcctcaatgccctgatggcaccagtcagctttgggtgggctacagtctggcc
tacctggagggacaggagaaggctcacactcaagaccttggtcaagctggctcttgcttg
cccgtcttttccaccatgccgttctcctactgcaacaaagctgcctgccactactcggct
cggaacgacaagtcctactggctctccaccacggcggctatacccatgatgccgctcttt
ggctatgagatcagatcccacatcagccgctgtgtggtgtgcgagacacgtttgccagct
gtggcttttcatagtcaggatccatcaattccacaatgcccacctggctggaggagcctt
tggacgggcttttcctttctccttgaaacaggggcaggtgacgagggtggcggtcagtcc
ctgacatcccccggcagctgcctcaaggacttccgaacccacccgatcatcgagtgccag
ggcgcgcgaggttcttgtcactactttgccaacctctacagcttctggctgaccgccata
cgccacactgatcagtttgtcaagcccaagcccgggaccatcaaagctgccggggagcag
cgacgcaaggccagtcaatgtcaagtctgcctcagacagtacagcacattttga
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integrated database retrieval system
