Syngnathus scovelli (Gulf pipefish): 125990585
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Entry
125990585 CDS
T08785
Name
(RefSeq) laminin subunit alpha-4
KO
K06241
laminin, alpha 4
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04510
Focal adhesion
sscv04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125990585
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
125990585
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Laminin_G_2
Laminin_G_1
Laminin_EGF
Laminin_II
Laminin_I
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
125990585
NCBI-ProteinID:
XP_049613881
LinkDB
All DBs
Position
Unknown
AA seq
1870 aa
AA seq
DB search
MAPKSICYLCLLGILTGIASLSSAVRFGTKQQTSLKVCAKGFFLSEQNKCLPCNCKGHAD
HCEDITGICHNCSDHSVGDFCEMCEDGYMLAPSQVGRHSCKPCACPLSVPSNNFAVHCDR
QGNIQRCKCKEGYAGHTCERCAPGYYGMPMKIGGSCKRCNCNGNSDPNLIFNWCHNVTGH
CQHCWSNTAGPNCERCAQGFYGDAIGAKDCRECECNKCGTSSCDDRTGVCHCKPGVTGRL
CDRCEEGYSGFSSCQGCQRCECRPASLRPTCHSLTHSCLCRPGAGGRYCERCLPGFWDYS
PSGCKKCDCESSHCDMHTGECLPEAATVNPCNISCDECIWHVIGDLRLSNKTLDHLRVGV
LNVSTGAAVNDRVKYYNYTAQHLQNQFYTWRNKMSEIKTETGEVEESTREVVSYIKKLSK
SETTVKSLGSQLDEETQQTLMLAKQFSKNLTDLNMRIEEMIHEWELYSVYQEADPELVRR
NTDEAINVVTKMRSLDLSTQGPLTIEESTEAHDLLRRIRQLEKKSLITQGHLTPLKSNLS
RFTANLSDAQSFLQNATSTIEKVRDMNNGNVLKVQRNEETLLKMVTEFTAIQNSTEKARE
IISKSQENVDEMDTLVQNVTQYHAAIDGASQKLMEKMEDLSSADTELVGRADEHAKELER
QATELEADLRDSDTNGFVQKAITAANVHINIAKYINDANITSLTTLNISQTANDSVTGIN
MQLDDLVVICGNVFKESVSLRSEQIEVETEVVDKLKYIEETRETLDKNTKKLEEIVQDIS
EIQTARTNDRLEYARKVAEGTLNRSAGVLETITPISNKVEEWAKNLNENKYSTVAYEQAI
DSAKESVEHLNFLVPELLDKLKVVEQKKPINNITTNVMRIRELIAQARSVAKKVQVSMKF
NGQSSVEIHADTSLEDLRAVTSISLFMRVDPDTDPIEDRFILYLGDKNGKKDYMGLAIKN
DNLVYMYKLGGEYIEIPLSSKPVSQWPAVFNYIKVERLGRHGKIYLVIPSQRSTDEQKFI
QKGEAPGTDSLFDVDPEDMVFFIGGVPPNATLPPPLTLAPFVGCIELASLNNDVISLYNF
KSTHKMDVVASPPCSRYKLAFSQSRIASYLFDGKGYALINNIERRGKIGYVTRFDISVRT
VANNGVLFIMVNADKFFLLEIKNGFLRLMYDFGFNDGPKLLEGNIPKLKINDARYHEISV
IYHQSKKVILLVDKSHVKSLENPKTTLPFSDIYIGGAPSNILLSRSELSAVVGLKGCVKG
FLFQKKDFNLLEEPGTIGISSGCPEESFASHKAYFMGESYLGSSAKMTPFDNFEGGLNFR
TVQASGLLFYHNEGPDEFSISLENGAVVMNTRGTRVKSHKKHYNDGNTHFLLASVNNHKY
LLLVDDKDKQEKKRPQSATRLTSDSTVKNFYFGGSPSGILKNFTGCITYAYINRQDRDIE
PEDFQRYTQNVQTFLQDCPVQKPAAALSRNRDDEHIAKRRQSRKVNRNESIHKLRSDSEV
NIAPCHLASHQATQHAYQYGSFANSRQHYKELPKSFSHKSNFSLSLKTNTSFGLIFYISD
IQEKNFMTLFLANGRLVYAFNVGNQRVEIWSNGNYNDGAWHNVIFIRNGSMGKLIIDGLT
VMEDRVMGKVVPWHVSSPLYFGGVPPKRAQKNIQSNTVNSFSGCLRNIQLNGHRLSSADE
TFGVTPCFEGPTEAGTFFAEQGGFILLDILDLGPRFQLEMEVRPRVTSGVLLHVPIAEGY
LSIYIYQGAVVAVLIDGTEELLATVSPRQSLCAGHWHRIAVMKDMNKLKLQVDQEVHSVD
GSLNLHSPITGKIFIGGAPDLSLAGSHVSKEPYVGCMRNLMINNSGVSFSDASLVSGAVS
IGSCPAVNQQ
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atggctcctaaatctatttgctacctctgccttttaggcattctcaccgggattgcctct
ttatcgtctgctgtcagatttggaacaaagcaacagacatcattgaaagtgtgtgctaag
ggatttttccttagtgaacaaaacaaatgcttgccttgtaactgcaaaggccatgcggat
cactgtgaggacatcacgggaatttgccataattgcagcgatcacagcgtgggtgatttc
tgtgaaatgtgcgaagatggttatatgctagcacctagccaggttggacgccatagttgc
aaaccctgtgcctgccctctctctgtcccctcaaataattttgcagtccattgtgacagg
caaggtaacattcaaagatgcaagtgcaaagagggttatgctggacatacctgtgagagg
tgtgcaccgggttactatggcatgccaatgaaaattggtggttcctgcaagcgatgtaac
tgtaatggcaactctgacccaaacctgatttttaattggtgccacaatgtaaccggccat
tgccagcactgctggagtaacaccgctgggccgaattgcgagaggtgtgctcaaggtttc
tacggcgatgccatcggtgccaaggactgcagagagtgtgagtgcaacaaatgtggtaca
tcttcatgtgatgacaggacaggagtgtgtcactgtaaaccaggggtcactgggagactc
tgtgaccgctgtgaggagggttactcgggtttctccagctgccaaggctgtcagagatgt
gaatgcaggccagcttctctccgtcccacctgccattccctcactcacagctgtctgtgc
cgcccgggtgctggaggacgttactgtgagaggtgtctcccaggcttttgggattatagc
ccctctggctgcaagaagtgtgactgtgagagcagtcactgtgatatgcacacaggagag
tgcctaccagaggctgcaacagttaacccatgcaatatcagttgcgatgaatgtatctgg
catgttattggagacttgcggctgtccaacaaaacactggaccatttgagggttggagtg
ttgaatgtttctaccggagctgcggttaatgatagagtcaaatattataactatacagct
caacacctgcagaatcagttttatacctggagaaacaaaatgtctgaaataaaaacagag
actggggaagtggaagagtcaacacgggaggtcgtatcgtacataaaaaaacttagtaaa
tcggaaactacagtgaagagtctggggagccagcttgatgaggaaacacagcaaactcta
atgctagctaaacagttcagcaaaaatctcactgacctcaatatgcgcattgaagaaatg
atccatgaatgggagctgtacagtgtttaccaggaagcggaccccgagttggtcaggaga
aacacagatgaagcgataaatgttgtgaccaaaatgaggagtcttgatttgtctacacaa
gggcctttaaccattgaagagtcaactgaagctcatgatttgttaaggcgtattcgtcag
ttggagaagaagtcactgattacacaaggtcatctcaccccactcaagtcgaatttgtct
cgctttacggccaacctgtccgacgcgcagtccttcctccagaatgcaactagtacaatt
gagaaggtgcgggatatgaacaacggcaatgtcctcaaagtccagaggaatgaggaaacg
ctgctgaagatggtaacagagttcacagctattcagaacagtacggaaaaagccagagag
ataatatctaaatcacaagagaatgtggatgagatggatacgttggtccagaatgtaaca
cagtaccatgctgcaattgatggtgccagccaaaagctgatggaaaagatggaagacctc
tcatctgctgacacagaattggttggaagggcagatgagcatgctaaagagcttgaacga
caggccaccgaactggaagcggacctgcgagatagtgataccaacggatttgtgcagaaa
gccataactgctgccaatgtccacatcaatatagctaaatacatcaacgacgccaatatc
acatcacttacaaccttgaatatatcccaaacagcaaatgactccgtcactgggatcaac
atgcagcttgatgatctagtggtaatatgcggcaatgttttcaaggagtctgtttcattg
cgttctgaacaaatagaggtagaaaccgaggtggttgataagctgaaatacattgaggag
acaagagagaccttggataaaaacaccaaaaaacttgaagaaattgtgcaggatatttct
gaaattcaaacagccagaactaacgaccgactggagtatgcacgcaaggtggctgaggga
acgctcaaccgatccgcaggagtgcttgagacaattacgcccattagtaacaaagttgag
gaatgggctaagaatctgaacgaaaataaatactctacagttgcctatgagcaagccatt
gattctgcaaaggaatcagtggaacacctcaattttcttgttcctgaacttttggataag
cttaaggtggttgagcagaagaagcctattaataacataactactaatgttatgagaatc
agagaactcatagcccaagccagaagtgtggcaaagaaggttcaagtgtctatgaagttc
aatggtcagtcatcagtggagattcatgctgataccagtttggaagatctgagggcagtg
acgtccatcagcttatttatgagagttgacccagacacagacccaatagaggaccgtttc
attttatatctgggagacaaaaatggtaagaaagactacatgggacttgccatcaagaat
gacaaccttgtgtacatgtataaacttggtggtgaatacattgaaatcccactgagctca
aaacctgtcagccaatggcctgctgtattcaactacatcaaagtagagaggttgggtcga
catgggaaaatctacctagtaatccccagtcagagatccacagatgaacagaaattcatt
cagaaaggcgaagctccgggaacggactcactttttgacgttgacccagaagacatggtg
ttctttattgggggtgtcccaccgaatgctacgctccctccacctttgactctggctccc
tttgtgggctgcatcgagttggcctcgctgaacaatgatgtaatcagtttatataatttc
aaaagcactcacaaaatggacgtggttgcatcaccaccatgttccaggtacaaactggct
ttttcacagagccgtattgcaagctatttatttgacggaaagggctatgcactgatcaat
aacatagaacggagggggaagattggttatgtcacaagatttgatatttcagtgcgaact
gtcgcaaacaatggcgtgcttttcatcatggtcaatgctgataaatttttccttttagaa
ataaaaaatggatttttacgcctaatgtatgattttggattcaatgatgggccaaaactt
ttggagggtaatataccaaagctaaaaataaatgatgcaagataccacgagatctcagtg
atctatcatcagtcaaagaaagttatccttctggtggacaagagtcatgttaaatctttg
gagaatcccaaaactactttgccattctcagacatctacataggtggagcaccctcaaac
attctcctatctaggtccgagctatctgctgtggttggcctcaaaggttgtgtcaaaggc
ttcctattccagaaaaaagactttaacctcttggaggagcctggcaccattggcatcagt
agtggctgccccgaggagtcctttgcatctcataaagcctatttcatgggtgagagctat
ttgggatcttcagcaaagatgacaccatttgacaattttgaaggaggcctcaactttaga
accgttcaagccagtggattattattctatcacaatgaagggccggacgaattcagcatt
tcccttgaaaacggagcagtggtgatgaacacgcgtggaacaagagtaaaatcacataag
aaacactacaatgacggaaatacacactttttattggcctcggtgaataatcacaagtat
ttattattggtggacgataaagacaagcaggagaagaaacggccacagtcagccacaaga
ctcacttctgattcgacagtaaagaacttctactttgggggatcaccaagtggtatctta
aagaactttacaggctgcatcacttatgcctacataaacaggcaagaccgagatattgag
ccggaagacttccagcgctacacccagaatgtccaaactttcctgcaagactgtccagtg
caaaagcctgctgctgctctttcgagaaacagggatgatgaacatatagccaaacgtagg
caatctcgtaaggttaacaggaatgaatccatccacaaattaagaagtgacagtgaagtg
aacattgcaccctgccatcttgcaagtcaccaagcaacacaacatgcctaccaatatggg
agctttgcaaacagtaggcagcactacaaagagctccccaaatccttttctcataagtcc
aacttttccttatccctaaagaccaacacatcgtttggcctcattttttatatatctgac
attcaagagaaaaattttatgactctctttctggccaatggtagacttgtatacgccttc
aatgtaggtaatcagcgagtggaaatctggagcaacggaaattacaatgatggagcatgg
cataatgtgatttttatacgtaatggaagtatgggaaaattgataatcgatgggctcaca
gtgatggaggacagagttatgggcaaagttgtgccctggcatgtcagcagtcctctctat
tttggaggcgtacctccaaagcgagcacaaaaaaatattcagagtaacacagtaaacagc
ttttctggctgtttgagaaatattcagctcaatggacaccggttgtcatcagcggatgaa
acatttggggtcacgccatgttttgagggacctactgaggcaggaacattctttgcagag
caaggaggcttcatacttttggacatacttgacttgggacctagatttcagctagaaatg
gaggtgcgaccccgtgtgacatcaggtgtacttctccatgtgcccatagcagagggttat
ttatcaatatacatttatcaaggagcagtcgtagctgttttgattgatgggacggaggaa
ttattggcaacagtttctccaagacagtctctgtgtgctggccactggcatagaattgca
gtgatgaaagatatgaacaaactcaagttgcaagtagaccaagaggtccacagtgtggat
gggtctcttaatcttcattctccaatcaccgggaagatttttattggtggagccccagat
ctctcccttgcaggcagccatgtaagcaaggagccttatgtaggttgtatgaggaacctg
atgatcaacaacagtggtgtaagcttcagtgacgcatctctagtcagtggagcggtcagc
ataggatcctgtccggctgtgaatcaacagtaa
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integrated database retrieval system