Shewanella sediminis: Ssed_1862
Help
Entry
Ssed_1862 CDS
T00596
Name
(GenBank) type III restriction enzyme, res subunit
KO
K19789
DNA repair protein RadD
Organism
sse
Shewanella sediminis
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sse03400
]
Ssed_1862
DNA repair and recombination proteins [BR:
sse03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
Ssed_1862
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA
AAA_22
AAA_16
SLFN-g3_helicase
DZR
zinc_ribbon_2
zf-ribbon_3
zf-tcix
SNF2-rel_dom
DUF3638
Zot
DZR_2
Motif
Other DBs
NCBI-ProteinID:
ABV36473
UniProt:
A8FUF0
LinkDB
All DBs
Position
complement(2240666..2242408)
Genome browser
AA seq
580 aa
AA seq
DB search
MQLRDYQQQAVDSAVNHFKKSTDSAVLVLPTGSGKSIVIAELARIANGRVLVLTHVKELV
AQNAEKVGMLTAEASIYSAGLNQKSTKNKTVVASIQSAVRAPQQFNEAFSLVIIDECHRV
SSETDSQYQQLLSHLRTQNPKIRLLGLTATPYRLDRGWIYHQHYHGKIGNPDKAVFQQCI
FELPMRPLIKQGYLSKPKLFDGLSVQYDFSELKTSSSGEYREKEVNDLLSHCGRATTAIV
KQLTEIGASRQGVIIFAATVRHAQEIMQRLMHETAALITADTKTVDRDEIICDFKARKIK
YLVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMVGRGLRICEGKEECLIIDYAANGYD
LFFPEVGQNKPNSKSVPVQVHCPVCDFANIFWGLVDDDGDIIEHFGRRCQALVEHGRQKT
QCDFRFRSKSCPNCGEENDIAAKICHQCDSMLIDPDKRLKEVLQQKHHHLFKCQAMLLEN
EADKLKVRYIDIDGNDYCQYFSLQSKAQIRAFYALFVLTHTRTPGLKHEQYQNAEQVIAA
AEQFRKPDLLLLKLNKKRWDLVETFFDYQGRFQVENKFNH
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
gtgcagttaagagattaccaacaacaagccgtcgattcggcagtcaatcactttaaaaaa
agtactgactcggctgtattagttctgccgacaggttccggaaaaagtattgtcattgcc
gaattggctcgaatagccaatggacgggtgctggtattaacgcatgtaaaagagttagtc
gctcaaaatgccgaaaaagtgggaatgctcacagccgaagcgagtatctactctgccggg
ctgaaccaaaaatcgactaagaataaaaccgtggttgccagcattcagtcagccgtgaga
gcaccacagcagttcaatgaagcattctctttagtgatcatcgatgaatgccacagggta
agctcagaaactgacagtcaatatcaacaactactgtctcacctacgcactcaaaacccc
aaaataaggctattaggcctcactgctacgccttaccgtctggacaggggctggatatat
caccaacattatcacggaaagattggtaaccctgataaagcagtatttcaacaatgcatt
tttgaactgcctatgcgtccgttgattaaacagggctacctgagtaagcctaagctgttc
gatgggttatcggtacagtacgattttagcgaattaaaaacgtcatccagtggagaatac
cgggaaaaggaggtcaatgacctgcttagtcactgtggacgagccacgacggccattgtt
aagcaactcactgagataggagccagcagacaaggggtcattatctttgccgccactgtt
cgccatgcacaagagataatgcagcgtttaatgcacgagacggcagccctcataacggcc
gacactaaaactgtcgacagggacgagatcatctgtgatttcaaggcgaggaaaataaag
tatctcgtcaatgtcgccgtactgaccacaggtttcgatgctcctcatgtggatcttatc
gccattttaaggcctaccgcctccgtcagcttatttcagcagatggtcggcagagggctt
aggatctgtgagggaaaagaggaatgtctgatcatcgattatgcagccaatggctacgat
ctcttttttcctgaagtgggacaaaataagcccaatagtaagagtgtccccgtacaagtg
cactgccccgtttgcgactttgctaatattttctgggggcttgtcgacgatgatggcgac
atcattgaacacttcggaaggcgatgtcaggcactcgttgaacatggccggcaaaaaact
caatgcgactttcgttttcgctctaaatcttgccctaattgtggtgaagaaaatgatatt
gcagcaaaaatttgtcatcaatgcgattcgatgttgatcgatcccgacaagcgcttgaaa
gaagtattacagcaaaaacatcaccacctctttaagtgccaggcgatgttactggaaaat
gaagccgataaattaaaggtgcgctatatagatatcgatggtaatgactactgccaatat
ttcagtttacagtctaaggcacaaatccgagccttctacgccctcttcgttctgacacac
actcgtactccggggttgaaacatgagcaataccaaaatgcagaacaggtcatcgcagcg
gcagaacagttcagaaaaccggatctactgctcctgaaactgaacaagaaacgatgggat
ttagtggaaacattcttcgattatcagggccgttttcaggttgagaataagtttaatcat
tag
DBGET
integrated database retrieval system
