Shewanella sediminis: Ssed_2833
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Entry
Ssed_2833 CDS
T00596
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sse
Shewanella sediminis
Pathway
sse03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ssed_2833
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sse03400
]
Ssed_2833
Enzymes [BR:
sse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ssed_2833
DNA repair and recombination proteins [BR:
sse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Ssed_2833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
ERCC3_RAD25_C
UB2H
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABV37440
UniProt:
A8FX67
LinkDB
All DBs
Position
3423275..3426748
Genome browser
AA seq
1157 aa
AA seq
DB search
MKPFSVLTPPAVKSATRAQTLFTLGGASQAITLANIVQKHDGLTLAVTNDTPTALLLETE
LTYLLKEKDIPVWIFPDRETLPYDNFSPHQDLVSQRLETLSRIPNAKQSLVIVPITTLMM
RLPPKSFLAGNVLLLTKGDNYCLQDVKQQLVDTGYHMVEQVYEHGEFAVRGSIIDLFPMG
STQPYRIELFDDEVESIRYFDPETQRSSGTIDSVRLLPAKEFPTNDAAIEGFRQRYRRRF
EVLVKEPESVYQMVSRKLLPAGIENYLPLFFDDTASLFDYLPDDAQLVNIGDLEQAVKTH
LAEIEIRYENRRVDPLRPLLSPKELYLLTEQIFSEFKQHPRTLLKVGDAQESGHQAKLEV
LPDVTANHKLKQPLSLLQEFSEGAGNILFSAESEGRREALFELLSKIDIKPKLFAHFDDF
VLSNAKLGLIVSPLSKGCIVEKSRGAKFSIICETELFGHKISQKRRRDKQRQISSDALVK
NLAELKVGQPIVHLDHGVARYMGLETLDTGGLIAEYLMLEYSGGDKLYVPVSSLHLISRY
SVGPDEEANLNKLGNETWAKAKRKAVEKIRDVAAELLDVYARRQARPGDACKVIEEEYAQ
FANSFPFEETVDQETSINAVMTDMCSPIAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQV
AILVPTTLLAQQHYENFKDRFADWPVKIEVMSRFKTAKEQKHVMEELANGKVDIVIGTHK
LLQSDAKFENLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTATPIPRTLNMAMSGMRD
LSIIATPPAKRLSVKTFIREYDDTTVIEALQREILRGGQVYFLHNNVESIEKRASELSEL
LPEARVVTAHGQMRERELEKVMSDFYHQKFNVLVCTTIIETGIDVPSANTIIIERADKFG
LAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTKDSVKRLEAIGALEDLGAGFLLATQDLEI
RGAGELLGDEQSGHISKIGFTLYMEMLEDAVKSLKEGKEPSLDQMLRHQCEIELRIPALL
PDDFVHDVNIRLSLYKRIANCETEQALDELRVELIDRFGLLPDATKNLMELTLYKHQATA
LGIKKLEMHAKGGSLEFNDDHKVDPGFIIGLLQSQPQNYRMDGPSKLKFIIPAESYSDRL
ALVKLLLGQLSQHRLGE
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctttttcagtattgactccgccagcagtaaaaagcgcaaccagagcgcaaaca
ctatttaccttaggtggcgcgtctcaagccatcacgttagccaatatagtccaaaagcat
gatggcttgaccttggctgtgactaacgacactcccacggctcttttactggaaactgaa
ttaacctatttgttgaaggaaaaagatattccggtgtggatatttccagatcgggaaacc
ttgccctatgacaacttctcgccgcatcaagacctggtgtcacagcgactggagaccctg
tcacggatccccaatgcaaaacagagtctggtcatcgtccccattacaaccttgatgatg
cgtttgccaccaaaatcatttctggccggtaatgtgctgctgttaactaaaggcgataac
tactgcctgcaggatgtaaaacagcaactggtcgataccggttaccatatggtggagcaa
gtctatgagcatggcgagtttgccgtcagggggtctatcatcgacctcttccctatggga
tcgactcagccctaccgcatagagctgtttgacgacgaggtagagtcaattcgctatttt
gacccggaaactcaacgctccagcggaaccatagattccgtacgcttgctacctgccaag
gagtttcctaccaacgatgcagcgatagaggggttcagacaaagataccgccgtcgattt
gaggttctggttaaagagcctgaatctgtctaccagatggtcagtagaaaactgctcccc
gcaggaatagaaaactacctgccccttttcttcgacgatacagccagcttatttgattac
cttcccgatgatgctcaactggtgaacattggcgatctggagcaggctgtaaaaacgcat
ttggcggagatcgagatccgctatgagaataggcgagtcgatccactgcggccattatta
tctccaaaagaactctatctactcactgaacagattttctcggaatttaagcaacacccc
agaacactgcttaaagtcggtgatgctcaggagtctggtcatcaggcaaagcttgaggtt
ttacctgatgtgactgctaaccacaaactcaagcagccactgagtttactgcaagagttt
agcgaaggtgctggcaatatactcttcagcgccgaatcagagggcagacgtgaagccttg
tttgagctgctgagtaaaatcgacattaagcccaaactattcgcccatttcgatgacttt
gtcctttcaaacgctaagcttggcttgatcgtatctcctctctctaagggatgtattgtc
gaaaaatcacgtggggcgaaattcagtatcatctgtgaaactgagctcttcgggcacaag
atttcgcaaaagcgacgccgagacaagcaaaggcagatcagtagtgacgcgctggtcaaa
aacctggccgaattaaaagtgggtcaacccatcgttcatctggatcacggtgtcgccaga
tatatgggactcgaaaccttagataccggtggcttgatcgccgaatacctgatgttagag
tattccggtggtgataagctctatgtcccggtctcatctcttcaccttatcagccgctat
agcgtagggcccgatgaagaggcgaacctcaataaactcggcaacgagacctgggcaaag
gcgaagagaaaagcggtcgagaagatccgtgatgtcgccgcagagttactcgatgtctat
gccagacgacaggcaagacccggagatgcatgcaaggtgatcgaggaggagtatgcgcaa
tttgccaatagtttccccttcgaggaaaccgtcgatcaggaaacgtcaattaacgctgtc
atgaccgatatgtgctccccgatagccatggatagactcgtatgtggtgatgtgggtttc
ggtaagaccgaggtggcaatgcgcgcggcttttgtcgcggtcaatgacggcaaacaggtc
gctatattagtgccgacgacgctgctggctcaacaacactacgaaaatttcaaagacaga
tttgccgattggccggtgaagatagaggtcatgtcgcgtttcaaaacggctaaagagcaa
aagcatgtcatggaggagttagccaatgggaaagtcgacattgttattggcacccataag
ttacttcaatccgatgctaaattcgaaaacctgggattgttggtgatcgatgaggaacat
cgattcggcgtaagacagaaggaaaagatcaaagccttaagagccaatgttgatatctta
accctgacagcgactccgatcccaagaacactcaatatggcgatgtccgggatgcgggat
ctgtcaattatcgcaacccctccggcgaagcgattatcggtaaaaacctttataagggag
tatgacgatacgaccgtgatagaggctctgcaacgtgagatcttacgtggtggacaagtt
tacttcttgcataacaatgtcgagtcaatcgaaaagcgtgccagtgagttaagtgagttg
cttcctgaggcgcgtgttgtcacggctcatggtcagatgcgtgagcgtgaacttgaaaaa
gtgatgtccgacttctaccatcaaaaatttaatgttttagtctgtactaccattatcgaa
acgggcatcgatgtcccctctgctaacaccattatcatcgagcgtgccgataagtttggt
ctggcacaactgcatcaactcagaggccgtgttggtcgctcacatcaccaggcgtatgcc
tacctgatgaccccccatcctaagcgcatgacaaaagattccgtcaagcggcttgaggcg
attggcgccttagaagatctgggcgccggatttttattggccactcaagatctggagatc
cgaggtgcaggcgaactgctgggtgatgaacaaagcggtcatatatctaaaattggcttc
actctctatatggagatgctcgaggacgcagtgaagtcactcaaagagggaaaagagccc
tcactcgatcagatgctaaggcaccaatgtgaaatcgaacttcgtattcccgccctgctt
cccgatgattttgttcacgatgtcaacatcaggctatcgctctacaagaggatagcaaac
tgtgaaacagagcaggcgctggatgaactcagggtggaattgatcgaccgctttggttta
ctcccggatgccactaagaatttgatggaattaaccctttataaacatcaagctacggct
ttaggcattaaaaagctcgagatgcatgctaagggcggaagtctggagttcaacgatgat
cataaggtcgatcctggttttatcatcggattactccagagccaaccacaaaactatcga
atggatggcccgagtaagttaaaattcatcatccctgcagagtcatactctgacaggcta
gccctggtcaagttgttactagggcaattatcacaacaccgtcttggagaataa
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