Shewanella sedimentimangrovi: JYB85_07130
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Entry
JYB85_07130 CDS
T07846
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
Organism
ssem
Shewanella sedimentimangrovi
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
VpsR
HTH_28
HTH_23
HTH_29
AAA_16
AAA_5
HTH_7
HTH_30
HTH_17
HTH_1
NUMOD1
HTH_IclR
HTH_22
nSTAND3
AAA_2
AAA
AAA_22
Xre-like-HTH
Motif
Other DBs
NCBI-ProteinID:
QSX38580
LinkDB
All DBs
Position
complement(1679835..1681202)
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AA seq
455 aa
AA seq
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MNLSVPSDSKGTRANQRELLVLDPNNDLPDISQVLAGYHWHCLKVSNAADALKLIDRHGI
KIAVAMIHQNDTGSLAKDLVNIQQYFPQLHWLAVSDEVLGQSCSWLLTVNVIDYFHLPLD
WQRFNDALGHGLGMSELASASNAKTRVPHALPPIRGEHPLIKNLRHALEKLGPSDETVLL
SGETGSGKGLCAKWLHRYSLRQHGPFVVVNCGALPASLIQSTLFGHEKGAFTGAERRYIG
HLEQANGGTLFLDEIADLPLDLQVNLLQFLDDKHIFRVGGCKPVELDCRLLFASHQDLET
AVDEGRFREDLYHRINVLRLHVPSLREYLEDIMLLAEQFLDEFNHSNDQLAFSDDAVQAI
SHYNWPGNVRELQNRIRRAAVMVEGPLICARDLGLEPAMLHRWQNDLASQREELDTEVIL
KAISDNRHNISAAARALNISRSTLYRLLKKSHLNN
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgaaccttagtgttccgagcgattcaaaaggaaccagggccaaccaaagggagctgttg
gtactggatcccaataatgatttgccagacatcagccaagtattggccggttatcactgg
cattgtttgaaagtatccaatgccgccgatgcccttaaactgatagacaggcacgggatt
aaaattgccgttgccatgatccatcaaaacgataccggcagcctcgccaaagatctggtc
aacatccaacaatactttccgcaacttcactggctggccgtcagcgatgaggtgttgggc
cagagttgcagctggttgctgaccgtcaacgtcatagattattttcacctgccgctggac
tggcaaagattcaacgatgcactgggccacggactgggaatgtccgaactggcttcagcg
agcaacgctaaaacccgggttccccatgctctgccccccattcgcggggaacatccactg
attaaaaatctgcgtcatgcattggaaaaactgggaccatcggacgaaaccgtactgctc
agtggtgaaaccggttcaggcaaaggcttgtgcgccaagtggctgcacaggtattccctc
aggcaacacggcccttttgtggtggtcaattgtggcgcccttcccgccagtcttattcaa
tcaaccctgttcggtcacgaaaaaggcgccttcaccggtgccgaacgccgttatattggc
catttggagcaagccaatggcggcaccctgtttctggatgaaattgccgatctgccgttg
gatttgcaggtcaacctgttgcaattcctagatgataaacacattttccgcgtcggcggt
tgcaagcctgtggagctggattgccgactgctgtttgcctcacaccaggatctcgaaacc
gccgtcgatgaaggtcgattcagggaagatttataccacaggatcaatgttctcagactg
catgtgccaagcctgagagaatatcttgaagacatcatgttattggccgagcaattcctt
gatgaattcaatcatagcaatgaccagttggccttcagtgacgatgcggtgcaagccatc
agccattacaactggccgggcaatgtccgtgaactgcaaaatcgtatccgccgggccgca
gtaatggtcgaaggacccttgatttgcgccagggatctgggtttggaaccggccatgtta
caccgttggcaaaacgatcttgccagtcagagggaagagcttgataccgaggtcatactc
aaagccatcagcgataaccgccataacatttccgcagctgcccgggccctcaacatctcc
cgctctaccctttatcgcttgctgaaaaaaagtcatctcaacaattga
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