Shewanella sedimentimangrovi: JYB85_10330
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Entry
JYB85_10330 CDS
T07846
Name
(GenBank) DEAD/DEAH box helicase
KO
K19789
DNA repair protein RadD
Organism
ssem
Shewanella sedimentimangrovi
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssem03400
]
JYB85_10330
DNA repair and recombination proteins [BR:
ssem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
JYB85_10330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
SWI2_SNF2
AAA_16
AAA_22
AAA_30
AAA
SLFN-g3_helicase
DZR
zf-tcix
zinc_ribbon_2
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QSX35777
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Position
2386540..2388312
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AA seq
590 aa
AA seq
DB search
MAPLIFARQSLLKLRDYQQDAVDAALRHFRSSKESAVLVLPTGAGKSLVIAELARLARGR
VLVLTHVKELVAQNADKVSVLTNAPGIFSAGLGQKQANDKTVVASVQSAARNPAAFDTPF
SLVIIDECHRVSVDQDSQYQQLLNQLKQCNPNLLLLGLTATPYRLGSGFIYRWHVHGKVG
NDKDPSFERCIFELAMRPLIKKGFLSPPLLLDGLAAQYDFSALTPGEGGDYAGAEVEHIL
DSSGRATTAIIKQLIDLGRSRAGVIIFAASVRHGEEILTLLEGESAALITADTDGKERDQ
LISAFKARQLKFLVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMVGRGLRIAEGKKDC
LIIDYAANGYSLFYPEVGKPRPDSRSVPVQVPCPECGFANTFWGKLDGDGDIVEHYGRRC
QGMVSVEPPRQCSFRFRARICPDCGAENDVAARECQQCRSALVDPDKHLKAVLGHRHHHL
FKVSDMQLQAKDEVLEVIYSDVDGTPFKEKFHMITAAQRRALYALFIQPHSRAPGTAMPR
FSRPEELVAARACFRSPDLLLLKKSKYGWELVRKFFDYQGHYSSAARFTG
NT seq
1773 nt
NT seq
+upstream
nt +downstream
nt
atggcccctttaatctttgccagacaaagtctattgaaactccgtgattatcagcaagat
gccgtcgatgcggcgctgcgccattttcgtagcagcaaggaatctgccgtgttggtgctg
cccaccggggccggcaagagtctggtgatcgccgagctggcgcggcttgcccgcggtcgg
gtgctggtgctgacccatgtgaaggaactggtggcccagaatgccgacaaggtatctgtg
ctcacaaatgcgccggggatcttctccgccggtcttgggcaaaaacaggccaacgacaag
actgtggtggcctcggtgcagtcggcggcccgtaatcccgcggctttcgacacgcccttt
tccctggtcatcatagacgagtgccacagggtgagtgtcgaccaggacagccaatatcag
cagctgctgaaccaactgaaacagtgcaatcccaacctcttgctgctgggtctgaccgcg
accccctatcgccttggctcgggctttatttatcgctggcacgtgcatggcaaggtgggc
aatgacaaagatccgagcttcgagcgctgtatcttcgaattggcgatgcggcccctgata
aaaaaaggttttctcagcccgccgctgctgctcgatggcctggcggcccagtacgatttc
agtgccctgacacccggcgaaggcggcgattacgccggcgccgaggtggaacacatattg
gacagcagcggccgcgccaccacggcaatcatcaaacagcttatcgaccttggccgaagc
cgcgccggggtgattatctttgccgcctcggtgcgccacggtgaagaaatcctcaccttg
cttgagggcgagagcgcggccctcatcaccgccgacaccgatggcaaggaacgcgatcaa
ctcatcagcgccttcaaggcccgacagcttaagtttctggtcaatgtagccgtgttgacc
acggggtttgatgcgccgcacgtggacttgattgccatcctccgccccacggcctcggtc
agcctgttccagcagatggtgggccgcggcctgcgcattgccgagggcaaaaaagactgc
cttatcatagattacgccgccaatggctacagcctcttttatcccgaggtgggcaaaccc
aggcccgacagtcgcagtgtgcctgtgcaggtgccctgccccgagtgcggctttgccaac
accttctggggcaagctggatggcgacggcgacatagtcgagcactacggccgccgctgc
cagggaatggtaagtgttgagccaccgcggcagtgcagcttccgcttccgtgcccgcatc
tgtcccgactgcggcgccgaaaacgatgtggcggcccgggaatgccagcaatgccgctcg
gccttggtggacccggacaaacacctgaaggccgtgctcggtcacaggcaccatcacctg
ttcaaggtcagcgatatgcagctgcaggcaaaggatgaggtgctggaagtgatttacagc
gacgtggatggcacccctttcaaagagaaattccatatgatcaccgccgcccagaggcgc
gcgctctatgccctgtttatccagccccacagccgcgcgcccggcactgccatgcccagg
ttcagtcgcccggaggaactggtggcggcgagggcgtgttttcgcagccccgatctgttg
ctgctgaaaaaaagcaaatacggctgggagctggtgcgcaagttcttcgactatcagggc
cactacagcagcgccgcgcgttttaccgggtga
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