Shewanella sedimentimangrovi: JYB85_11390
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Entry
JYB85_11390 CDS
T07846
Symbol
fadJ
Name
(GenBank) fatty acid oxidation complex subunit alpha FadJ
KO
K01782
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
]
Organism
ssem
Shewanella sedimentimangrovi
Pathway
ssem00071
Fatty acid degradation
ssem00280
Valine, leucine and isoleucine degradation
ssem00310
Lysine degradation
ssem00362
Benzoate degradation
ssem00380
Tryptophan metabolism
ssem00410
beta-Alanine metabolism
ssem00640
Propanoate metabolism
ssem00650
Butanoate metabolism
ssem00907
Pinene, camphor and geraniol degradation
ssem00930
Caprolactam degradation
ssem01100
Metabolic pathways
ssem01110
Biosynthesis of secondary metabolites
ssem01120
Microbial metabolism in diverse environments
ssem01200
Carbon metabolism
ssem01212
Fatty acid metabolism
Module
ssem_M00087
beta-Oxidation
Brite
KEGG Orthology (KO) [BR:
ssem00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
JYB85_11390 (fadJ)
00650 Butanoate metabolism
JYB85_11390 (fadJ)
09103 Lipid metabolism
00071 Fatty acid degradation
JYB85_11390 (fadJ)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
JYB85_11390 (fadJ)
00310 Lysine degradation
JYB85_11390 (fadJ)
00380 Tryptophan metabolism
JYB85_11390 (fadJ)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
JYB85_11390 (fadJ)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
JYB85_11390 (fadJ)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
JYB85_11390 (fadJ)
00930 Caprolactam degradation
JYB85_11390 (fadJ)
Enzymes [BR:
ssem01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
JYB85_11390 (fadJ)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
JYB85_11390 (fadJ)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
JYB85_11390 (fadJ)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
Motif
Other DBs
NCBI-ProteinID:
QSX35955
LinkDB
All DBs
Position
complement(2621513..2623633)
Genome browser
AA seq
706 aa
AA seq
DB search
MEKTFNLSRREDGIALLTMDVPGETMNTLKAQFAPEITAILQEIKNDTSIKGLVLISGKA
DSFVAGADISMLDACQSAEDARLLSRQGHHVFAELEGLNIPVVAAIHGACLGGGLELALA
CHSRVCSDSSKTMLGVPEVQLGLLPGGGGTQRLPRLVGIAKALDLMLTGKQVRPKQALKM
GLVDDVVPQSILLDSAIELAKAGKKVRKPVKQSLVTKLLEGTPVGRNIMFDQAGKQVLKK
TQGNYPAPMKIIDCVRQGMAKGIEKGLEVEASHFGELVATAESAALRSIFFATTEMKKET
GAGDATARALNKAVILGGGLMGGGIASVTTTKAKIPVRIKDINEKGLSNALGYAYKLLDK
GVKRRYMSAAERDKLMALMTTTTEYKGVKDADIVVEAVFEDLKLKHQMVQDIERECSEHT
IFASNTSSLPITQIAEVASRPENVIGLHYFSPVEKMPLVEVIAHEKTSPETIATTVAFAR
KQGKTPIVVKDGAGFYVNRILALYMNEAAQLLLEGQSVDHLDKALVKFGFPVGPMTLLDE
VGIDVGAKISPILEKELGERFKAPAAFDKLLADERKGRKNGKGFYVYGKASKKGKQVDES
VYAVLGLKPATAREPKEIAQRCVVQMLNEAVRCLEAGIIASPRDGDIGAIFGIGFPPFLG
GPFRYMDTLGAGQLVSILEGYQAKYGDRFAPAPLLKTMAAENKRFY
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagacttttaacctgagccgccgcgaggacggtatcgccctgctgaccatggat
gtgccgggcgagaccatgaataccctgaaagcccagtttgcccccgagatcaccgccatt
ttgcaggagatcaagaatgataccagcatcaagggtctggtgctgatctccggcaaagcg
gattctttcgtcgccggtgccgatatttccatgttggatgcctgccaaagcgccgaagat
gcgcgcctgctgtcgcgtcagggccaccatgtgtttgccgagctggaagggctgaatatc
cccgtggtggcggccattcatggtgcttgcctggggggcggcctggagctggcgctggcc
tgccatagtcgcgtctgcagtgacagcagcaaaaccatgctgggggtgccagaggtgcag
ctgggattgttacccggcggcggtggtacccagaggctgcctcggctggtgggcattgcc
aaggcactggatttgatgctgacgggcaaacaggttcgcccaaaacaggcgttgaaaatg
ggcctggtggacgatgtggttccccagagcattttgctggacagcgccattgaattggcc
aaagcaggtaaaaaagtccgcaaacccgtgaagcagtctttggtgacaaagctgctggaa
ggcacacccgtggggcgcaacatcatgtttgatcaagccggcaaacaggtgctgaagaag
acccagggcaattatcccgccccgatgaaaatcattgactgtgttcgccagggtatggcc
aagggcattgagaaaggattggaagttgaagccagtcattttggtgagctggtggcgaca
gctgaatctgcggccctgcgctccatcttttttgccaccacggaaatgaagaaggaaacc
ggtgccggcgatgcgacggccagggcgctgaacaaggctgtgatcctcggcggtggcctg
atgggcggcggcattgcttctgtgaccaccaccaaggccaagatcccggtcaggattaag
gacatcaacgagaaaggtctgtccaacgcgttgggatatgcctataaattgctcgataag
ggcgtgaaacgcagatatatgtcggcggccgaacgggataagctgatggccttgatgacc
actacgaccgagtacaaaggcgtcaaggatgccgacatagtggttgaggcggtatttgag
gatctcaaactcaaacaccagatggtgcaggatattgagcgcgagtgcagcgagcacacc
atattcgcatcaaatacctcgtctttgcctattactcagatagcggaagttgccagtcga
ccggaaaacgtgattggcctgcattatttctctccggtagaaaaaatgccgctggtggaa
gtgattgcccatgagaaaacgtcgcctgagaccatagccaccacagtggcctttgcccgc
aagcagggtaagaccccgattgtggttaaagacggtgccggtttctacgtaaaccgtatt
cttgccctctatatgaatgaagctgcgcagttgctgctggaaggtcaaagtgttgaccat
ttggacaaggcgctggtgaagttcggcttccctgtgggtcccatgaccttgctcgatgaa
gtgggcatagatgtcggggccaagatttcccctatcctggaaaaggagttgggtgagcgt
ttcaaggcgcctgccgcctttgacaagttgcttgccgatgaacgcaaagggcgcaagaac
ggcaagggattctatgtgtatggcaaagccagcaaaaaaggtaagcaggtggatgaaagc
gtctatgcagtgctgggactgaaaccggcaaccgccagagagcccaaagaaattgcccag
cgctgtgtggtgcagatgctcaacgaagccgtgcgctgtttagaggccgggatcattgct
tccccccgtgacggcgatataggcgccatatttggtatcggctttccgccgttcctgggt
gggccgttccgctatatggatactttgggggccggccaattggtatcaatccttgaaggt
taccaagccaagtatggtgacaggtttgcgccagcgcccttgctcaagaccatggcagca
gaaaacaaacgtttttattga
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