Solea senegalensis (Senegalese sole): 122765596
Help
Entry
122765596 CDS
T07721
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
122765596 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssen03400
]
122765596 (lig4)
Enzymes [BR:
ssen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
122765596 (lig4)
DNA repair and recombination proteins [BR:
ssen03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
122765596 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
122765596
NCBI-ProteinID:
XP_043875889
LinkDB
All DBs
Position
LG2:complement(25498332..25503451)
Genome browser
AA seq
911 aa
AA seq
DB search
MEGSSGSDAAGEPSVAEQVPFLHLCTVLEKIQKSKLRPEKSKILRDFIDSWRKFHSALHK
DKAKTTDSFYPAMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLSNYRAP
TTSQGEAGDFASMAYFVLKKRLTSQGNLSIKEVNDFLDSVAANNAGKQKDLVKKSLLHLI
TRSSPLEQKWLIRMILKDMKLGVSKETVLQVFHPDAAELYNVNTDLNKVCQQLHDPSVSL
SEVSIGLFSAFKPMLAAVANIRNVEKQMGNSPFYIQTKLDGERIQLHKDGDVYKYFSRNA
FEYTQQFGGSPLEGSLTPYIHNVFKSHVVNCILDGEMMAYNPTTDNFMQKGSKFDIKRLM
EDSELQTCFCVFDVLLVNNQKLGKETLKKRNETLQTIFNPVKGRLHLVPKTDARTMQEVV
NALNDAIDDREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKGR
RGGMMSHFLGAVAEAPKPGEKPSVFHSFCRIGSGYTMKELYDLGLKLAKHWKVYRKNDPP
TSILCGTEKPEVYIEPCNSVIIQVKAAEIVGSDMYKTNCTLRFPRIEKIRDDKEWHQCMT
LAELDQFRSKASGKLASRHLHITDEEPQKKKRKLVARPKKVVGIIDHFKPQDLSGVTKET
DMFEDVEFCILNGTDDHPKAELEKGVARCGGIVVQNPGRDTYCVIAGVENMRVKNLILAN
QHDMVWASWLLECLDQKEVVPWQPRHMIHMSPSTKEHFGKEYDAYGDSYFVDTDVQQLRE
LFGRIRGADNAPAAVDIGQVEQRYGWDNLPTSMFRPFRAYMDSCADVGDPDTAIPATCLD
IRALEFRYHGGTVVLKLEEGVSHVIVTEETRLVDLRTLRRRFRRKFKIVRDSWVTDSIKA
GHLMNDDSYLV
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggagggatcttctggaagtgatgctgctggagagccatctgttgcagaacaggttcca
tttcttcacctgtgtactgttctagagaagatccagaagtctaaactgcgtccggaaaaa
tccaagatcctcagggatttcattgattcgtggaggaagtttcattctgccctccacaaa
gacaaggccaaaacaacggactctttctacccagctatgcgtctcatagttccttcattt
gaacgagagcgaatggcatacggcatcaaagagagtatgttagcgaaactctacatcgat
gtattaggcctaccaaagaatggtccagaggccaataaactgtcgaactacagagcccca
actacatcccaaggagaagctggagactttgctagcatggcctactttgtcctcaagaaa
cggctcaccagccaaggaaacctcagcatcaaagaagtcaatgacttcctagattcagtg
gctgccaacaatgctggtaagcagaaggatcttgtgaaaaaaagtcttcttcacctcatc
acccggagctcacctcttgagcaaaagtggctcatcagaatgattctgaaggacatgaag
cttggcgtcagcaaagaaactgttctccaggtcttccacccggacgctgccgagctctac
aacgtcaacacagacttgaacaaagtgtgccagcagctccatgacccttctgtgtcattg
agcgaagtctccattggacttttctctgcctttaagcccatgttggcagctgtggctaac
attcgcaatgtggagaaacagatgggcaacagccctttttacatccagaccaaactggat
ggggagcgcattcagcttcacaaagatggggatgtgtacaaatactttagccgaaatgct
tttgaatacacacaacagtttggaggatcccctctagaaggctcactcacgccttatatc
cataatgtttttaaaagccatgtggtgaattgcatccttgacggtgagatgatggcgtac
aacccaaccacagataacttcatgcagaaagggagcaagttcgatattaagaggctgatg
gaagactctgagctacagacgtgcttctgtgtgtttgatgtcttgttagtcaacaaccag
aagcttgggaaggaaacactgaaaaagcgcaacgagacccttcagacgattttcaaccca
gttaagggaaggttacacctggtgccaaagacagacgcaaggaccatgcaggaggtggtg
aacgctctcaatgatgctattgatgacagagaagagggcatcatggtgaaggatcctttg
tctatctacaaacctgataagcgtggggaaggatggctgaaaataaagccagaatatgtt
gatggcttgatggatgagcttgacctgctgattgttggtggttattggggcaaagggaga
cgaggtggtatgatgtcccatttcttaggtgccgttgctgaagctccaaagcctggagag
aaaccttcggttttccactcgttctgccgcattggctccggctacaccatgaaggagttg
tatgaccttggtttaaagttagccaagcattggaaagtgtatagaaaaaacgacccacca
acatccatcctgtgtggaacagagaaacccgaagtctacatcgagccctgcaactctgtc
atcatccaagtgaaggcagcagagatagtcggaagcgacatgtacaaaacaaactgcacc
ctgcggttccccaggatcgagaagattcgtgacgacaaggagtggcaccagtgcatgact
ttggcagagctggatcagttccgcagcaaggcgtcggggaaactcgcctccaggcacctt
cacatcaccgacgaggaaccacagaagaagaagcgcaagctggttgccagacccaagaag
gtggttgggatcatcgaccactttaagccacaggacctctctggggttaccaaggagacg
gacatgtttgaagatgtggagttctgcatcctgaacggtactgacgatcatcccaaagct
gagctggagaagggggtggccaggtgtggaggaatcgtggttcaaaacccaggacgagac
acctactgtgtgattgctggtgtggagaacatgcgtgtaaagaacctgattttagccaac
caacatgacatggtctgggcctcgtggctgctggagtgtctggaccagaaggaagtggtg
ccatggcaaccacgacacatgatccacatgtcaccctccaccaaggagcactttggaaag
gagtacgacgcctatggtgacagctacttcgtggacacagacgtgcagcagctgcgggag
ttgtttggccgcattcgtggcgctgacaatgcgccggcggccgtggatataggacaggtg
gagcagcgttacggctgggataacctacccaccagcatgttcagacccttcagggcctac
atggacagctgcgctgatgtaggagaccccgacaccgccatacctgccacttgtttggac
atcagggcgctggagtttcgctaccacgggggcacagttgtgctgaagctggaggaagga
gtgtctcatgtcatcgtcacagaggaaacgagacttgtggatctgaggactctgagacga
cgttttaggagaaagtttaagattgtaagagattcgtgggtgactgactcaatcaaagca
gggcatctcatgaatgatgacagttacctggtttga
DBGET
integrated database retrieval system
