Solea senegalensis (Senegalese sole): 122780615
Help
Entry
122780615 CDS
T07721
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ssen
Solea senegalensis (Senegalese sole)
Pathway
ssen03013
Nucleocytoplasmic transport
ssen03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssen00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122780615 (upf1)
03015 mRNA surveillance pathway
122780615 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssen03019
]
122780615 (upf1)
Enzymes [BR:
ssen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122780615 (upf1)
5.6.2.5 RNA 5'-3' helicase
122780615 (upf1)
Messenger RNA biogenesis [BR:
ssen03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122780615 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
122780615 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
122780615
NCBI-ProteinID:
XP_043899628
LinkDB
All DBs
Position
LG14:complement(14817262..14832012)
Genome browser
AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEADLLGADTQGSEYDFTDFTLPSQTQTQGHTQSQVDSQVNG
PDDGLLNGGIDDSVAKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAPGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSKQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNTAGRPSNMYFQTHDQIGMIGAGPGHMA
AMNIPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGKPGRGGRQKMRGNHGAGQGNGPNS
QASQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagactctcaccttcttggacaccgaggaa
gcggacttgctcggagcagatacccagggctccgagtacgatttcactgatttcaccctg
ccaagtcaaacgcaaactcaaggccatacccaaagtcaggtggacagccaggtaaacggt
cctgatgatggactcctcaacggtggaatagacgactctgttgctaaagccagccagctg
ttggccgagcttaactttgaggaggatgaagaagacacatactacaccaaagacctgcct
gtgcacgcatgcagctactgtggtatccacgatccagcatgtgtggtgtactgcaatacc
agcaagaagtggttctgtaatggacgtggcaatacatccggcagccacattgtgaaccac
ttggtgagagccaaatgcaaagaggtgacactgcataaagacggcccgctgggcgagact
gtgcttgagtgttacaactgtggctgtcgaaatgtcttcctgcttggcttcatcccggcc
aaggctgattctgtggtggtgttactctgcaggcagccatgtgccagccagagtagctta
aaagacattaactgggacagctctcagtggcaaccactgatccaagatcgctgctttttg
tcctggctggttaagatcccgtcagagcaagagcagctacgagcccgtcagatcaccgct
caacagatcaacaagctggaggagctctggaaggacaatcccactgccaccttggaagac
ctggagaaaccgggcgtcgatgaagaacctcagcatgtgttgctgcgctacgaggatgcc
taccagtaccaaaatatctttggccctttggtcaaactggaggccgactacgacaagaag
cttaaggaatcccagacccaagacaatataacagtcaggtgggaccttgggttgaataaa
aagcggattgcctatttcacactgcccaagacggattcaggtgatatgcggctgatgcag
ggtgatgaaatctgcctccggtacaagggagatctggctccactgtggaaaggcattggc
catgtcatcaaagtccctgacaactatggggatgaaattgcaattgagctgcgaagcagt
gtcggagcacctgtagaaatcccgcataacttccaggtggactttgtgtggaagtccact
tcctttgacaggatgcaaagtgccctgaagacatttgcagtggatgagacctctgtgtct
ggctacatttaccacaaactgctgggccacgaggtggaggatgtcaccatcaagtgccag
ctgcctaagcgattcactgccccgggcctgcccgacctcaatcactcacaggtgtatgct
gtgaagacggtgctgcagaggcctctcagtctgattcagggtcctcccggcactgggaag
actgtcacgtctgccaccattgtttaccacctgtcccgacagggaaatggccctgttctg
gtgtgtgctcccagtaacattgctgtggatcagttgactgagaagatcgacaagactggg
ctgaaggttgtcaggctgtgtgccaagagcagggaggccatcgagtcaccagtgtcattt
ttggcactgcacaaccagatcagcaacatggacagtatgccagagcttcagaaactgcag
cagctgaaggatgagactggtgagctgtcatctgctgatgagaaacgctacagggctttg
aaacgcactgctgagagggagctgctcatgaatgctgatgtgatctgctgcacctgtgtc
ggggctggagacccccgtcttgccaagatgcagttccgctctatcctgatcgatgagagc
acccaggccaccgagccagagtgtatggtgcctgtggtgttgggagccaagcagctaatt
ttggtgggtgaccactgccagctgggtcctgtggtgatgtgtaagaaggcagccaaggca
ggtctgtcccagtccctttttgaacgcctggttgttctggggatccggccaattcgcctc
caggtccagtaccgtatgcacccagctctcagtgccttcccctccaacatcttctatgag
ggctccctgcagaatggtgtcaccgcagctgaccgcattaaaaaaggctttgacttccag
tggccacagccggacaagcccatgttcttctacgtgactcagggccaggaggaaattgcc
agctctggaacctcctacctcaacaggactgaggctgcaaacgtagagaagatcaccacc
aggctgttgaaggccggagccaaacccgaccaaatcggcatcatcaccccttatgagggt
cagcgctcttacctggtccagtacatgcagttcagtggctccctgcacaccaaactgtat
cagcaagtggaaattgccagtgtggatgccttccagggaagagagaaggacttcatcatc
ctctcttgtgttcgtgccaatgagcatcagggcatcggcttcctgaacgaccctcgccgt
ctcaacgtggcgctgaccagagccaagtatggtgtgatcatcgtggggaaccccaaggcc
ctctctaagcaaccgctgtggaacaacctgctgaacaactacaaggagcagaaggtcctg
gtggaggggcccctcaacaacctgagggagagtctaatgcagttcagtaaaccccgcaag
ctggtcaacaccatcaaccctggaggacgcttcatgagcactgcaatgtatgatgcccgc
gaggccctcatccctggctctgcttatgaccgcagcaacactgctggacgtccatccaac
atgtactttcaaactcatgaccagatcgggatgattggggcaggccccggtcacatggct
gcgatgaatatccccatacccttcaacctggtgatgccaccaatgcctccacccagctac
ctgggtcagaccaacggccccgctgcaggtcgaggcgctatgaagggtaaacctggacgt
ggcggacggcagaagatgcgtggaaaccacggtgctggtcagggaaatggacccaacagc
caggccagccaggatggggcctcgcagtccttctcccagggaccattgacacaaggatac
atctccatgagccagccctctcagatgagccagcctggcctctcacagccagagctctct
caggacagctaccttggcgatgagttcaagtctcaaattgacgtggctttgtcccaggac
tcgacttaccagggtgaacgtgcataccagcatggtggcgtgacgggactgtcacagtat
taa
DBGET
integrated database retrieval system
