Streptomyces alfalfae: A7J05_21170
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Entry
A7J05_21170 CDS
T05110
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ssia
Streptomyces alfalfae
Pathway
ssia03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A7J05_21170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssia03400
]
A7J05_21170
Enzymes [BR:
ssia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A7J05_21170
DNA repair and recombination proteins [BR:
ssia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A7J05_21170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
4HBT_3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
APY87883
UniProt:
A0A1P8TJR3
LinkDB
All DBs
Position
5064282..5067836
Genome browser
AA seq
1184 aa
AA seq
DB search
MSLHGLLDAVVKDAALAEAVEAAGDGHRMHVDLVGPPAARPFAVAALARDAGRPVLAVTA
TGREAEDLAAALRTILPPDGVVDFPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRADDP
ETGPVSVIVAPVRSVLQPQVKGLGELEPVALRAGQTTDLNEIVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDEVREKAAALAEQHPELAELLGKIAEGIAVEGMESLAPVLVDEMELLIDVMPKGSMAV
VCDPERVRSRAADLVATSQEFLQASWAATAGGGEAPIDVDAASLWGIADVRDRARELGMM
WWSVSPFAADAELTATSAADAAGDTLKLGMHAPETYRGDTARALADTKGWLADGWRTVYV
TEGHGPAARTVEVLGGEGIAARLDGDLGELTPSLVHVSCGSIDYGFVDPALKLAVLTETD
ISGQKAAGKDGQRMPARRRKTIDPLTLESGDYIVHEQHGVGRYIEMVQRTVQGATREYLV
VEYAPAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAA
DLIKLYSARMAAPGHSFGPDTPWQRELEDAFPYVETPDQLTTIAEVKEDMEKTVPMDRLI
CGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVNVRALSRF
QTETESKATLEGLRDGSVDIVIGTHRLFSSETRFKDLGLVIVDEEQRFGVEHKEQLKKLR
ANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRREL
LREGQVFYIHNRVESIDRAAARLRDIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLV
STTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETA
HERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADY
RASLEGGVEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASATTEEDVRAVREEL
TDRYGKLPEPVENLLLVAGLRMLARACEVGEIVLQGNNIRFAPVELRESQELRLKRLYPG
TLIKGNAHQILVPRPKTAKVGGKPLVGRELLGWVGEFLTSILGS
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggacgccgcactcgccgaagcggtc
gaggccgcgggcgacggccaccgcatgcacgtcgacctggtcggcccgcccgcggcccgc
ccgttcgcggtggcggcgctcgccagggacgccggccgtcccgtcctcgccgtgacggcc
acgggccgagaggcggaggacctggccgcggcgctgcgcacgatcctcccgccggacggc
gtggtggacttcccgtcctgggagacgctgccgcacgagcggctctcgccgcgctccgac
accgtcggccgccgcctggccgtgctgcgccgcctcgcgcacccccgggcggacgacccc
gagacgggcccggtctccgtcatcgtcgcgccggtccgctcggtcctccagccgcaggtc
aagggcctcggtgagctggagccggtggcgctgcgcgccggacagacgacggacctgaac
gagatcgtcgaggcgctggcggcggccgcgtacgcccgggtggagctggtcgagaagcgc
ggcgagttcgcggtgcgcggcggcatcctcgacgtcttcccgccgaccgaggagcacccg
ctgcgggtggagttctggggcgacgacgtcgaggagatccgttacttcaaggtcgccgac
cagcgctccctggaggtcgccgagcacggtctgtgggcgccgccctgccgtgagctgctg
ctcaccgacgaggtgcgggagaaggcggccgccctcgccgagcagcacccggagctggcc
gaactgctcggcaagatcgccgagggcatcgcggtcgagggcatggagtcgctggcgccc
gtcctggtggacgagatggagctgctgatcgacgtcatgccgaagggctccatggcggtg
gtctgcgacccggagcgggtgcgttcgcgcgcggccgacctggtggcgacctcgcaggag
ttcctccaggcgagctgggcggcgacggcgggcggcggcgaggccccgatcgacgtggac
gcggcgtccctgtggggcatcgcggacgtccgcgaccgcgcccgcgagctgggcatgatg
tggtggtcggtcagccccttcgccgcggacgcggagctgaccgcgacatctgccgctgac
gcggcgggcgacaccctgaagctcggcatgcacgcgcccgagacctaccggggcgacacc
gcgagggcgctcgcggacaccaagggctggctggccgacggctggcgcacggtgtatgtc
accgagggccacggccccgccgcccgcacggtcgaggtccttggcggcgagggcatcgcg
gcccgcctcgacggcgacctcggcgagctgacgccctcgctcgtgcacgtctcctgcggc
tcgatcgactacggcttcgtcgaccccgccctcaagctcgccgtcctcaccgagaccgac
atctcgggccagaaggcggccggcaaggacgggcagcgcatgcccgcgcgccgccgcaag
acgatcgacccgctgaccctggagtccggcgactacatcgtccacgaacagcacggcgtc
ggccggtacatcgagatggtgcagcgcaccgtccagggcgccacccgcgagtacctggtg
gtggagtacgcccccgccaagcgcggccagcccggcgaccgcctgtacatccccaccgac
cagctggagcagatcaccaagtacgtgggcggcgaggcccccaccctgcaccggctcggc
ggcgccgactggacgaagacgaaggcgcgcgcgaagaaggcggtcaaggagatcgccgcc
gacctcatcaagctgtactccgcccggatggccgcccccggccactccttcggccccgac
acgccctggcagcgcgaactggaggacgccttcccgtacgtggagacgcccgaccagctc
accacgatcgccgaggtcaaggaggacatggagaagacggtcccgatggaccgcctgatc
tgcggcgacgtcggctacggcaagacggagatcgcggtccgcgccgccttcaaggccgtg
caggacggcaagcaggtcgccgtcctcgtgcccacgacgctcctggtgcagcagcacttc
ggcacgttctccgagcggtactcgcagttcccggtcaacgtgcgggcgctcagccgcttc
cagacggagaccgagtccaaggccaccctcgaagggctgcgggacggttcggtggacatc
gtcatcggcacgcaccgcctgttctcctccgagaccaggttcaaggacctgggcctggtc
atcgtcgacgaggagcagcgcttcggcgtcgagcacaaggagcagctgaagaagctccgc
gccaacgtcgacgtcctgacgatgtccgccacccccattccccgtacgctcgaaatggcg
gtcactggcatccgcgagatgtcgacgatcaccaccccgcccgaggagcggcacccggtc
ctgacgttcgtcgggccgtacgaggagaagcagatcggcgccgcggtccgccgcgaactg
ctgcgcgagggccaggtcttctacatccacaaccgggtggagtccatcgaccgggcggcg
gcccgcctgcgggacatcgtgcccgaggcccggatcgccacggcccacggccagatgtcg
gaacaggccctggaacaggtggtcgtcgacttctgggagaagaagttcgacgtgctcgtc
tcgacgacgatcgtcgagtccggcatcgacatctccaacgccaacaccctcatcgtcgag
cgcggcgacaacttcggcctctcccagctgcaccagctcaggggccgcgtcggccgtggc
cgcgagcgcggctacgcctacttcctctacccgccggagaagccgctcacggagaccgcc
cacgagcgcctggcgacgatcgcccagcacaccgagatgggcgccggcatgtacgtggcg
atgaaggacctggagatccgcggcgcgggcaacctcctcggcggcgagcagtccggccac
atcgcgggcgtcggattcgacctgtacgtccgcatggtcggcgaggcggtggccgactac
cgcgcctcgctggagggcggcgtcgaggaggaaccgccgcttgaggtcaagatcgagctg
ccggtcgacgcgcacgtcccgcacgactacgcccccggggagcggctgcgcctccaggcg
taccgcgccatcgcctccgccaccacggaggaggacgtcagggcggtgcgcgaggagctg
accgaccggtacggcaagctgccggagccggtggagaacctgctcctggtcgcgggcctg
cggatgctcgcgcgcgcctgcgaggtcggcgagatcgtcctccagggcaacaacatccgc
ttcgccccggtggagctgcgggagtcgcaggagctgcgcctcaagcgcctctacccggga
acgctcatcaagggcaacgcccaccagatcctggtgccgcgccccaagaccgcgaaggtc
ggcggcaagccgctggtcgggcgggaactgctgggctgggtcggggagttcctgacgtcg
atcctggggtcgtag
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