Solibacillus silvestris DSM 12223: SOLI23_07720
Help
Entry
SOLI23_07720 CDS
T04506
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ssil
Solibacillus silvestris DSM 12223
Pathway
ssil03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ssil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
SOLI23_07720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssil03400
]
SOLI23_07720
Enzymes [BR:
ssil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
SOLI23_07720
DNA repair and recombination proteins [BR:
ssil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
SOLI23_07720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
PRD
Motif
Other DBs
NCBI-ProteinID:
AMO85473
LinkDB
All DBs
Position
1593134..1594969
Genome browser
AA seq
611 aa
AA seq
DB search
MKPMLLTDVPDIPLGDDWLYEAKYDGYRCILVWDKGKNIPELKSRNGNVLNEKFPEIIRF
CKSIYAEIEPYLPLIFDGEIVYLINHFQSKFSFVQKRGKMTNQKNIESNSKTFPCHYIVF
DLLRLKGKDKGNSRLTTRKQLLSDLFERLNLLDTVQYNDSKRLQAIDVFENPHLLWQKVT
SHNGEGIIAKKRSSKWLENTRTKSWQKIKNWKHVNVILTKFDQLNGFFNGAIYQEDMLME
VVSFKHGLSEEESKTLIAFFKSKGTVKEKSIFEIPPSICVTVACIDFDGSKLREPRFHSF
QHYLDVSECNWQQMQRQLNPIPESVIVTHPDKPVFPASHITKDDYLYYLQKVAPMMMPFL
QDRLLTVIRYPHGVPGESFYQKNYIENLPEFITTPLVDDTHFILCNNLESLLWLGNQLAL
EFHIPFQPVSSEQPTEIVFDLDPPSVHEFGLAVDAAVKFKTIMDYFKLTSFIKTSGGKGM
QIYIPLPLHTFSYEDTGVFTEFICRFLVQQFPDSFTIERMKKNRGKRLYLDYVQHREGKT
IVAPYSPRGNNKGLIATPLLWEEVNEKLTPDLFTIPNIIKRLERMADPFKNFREVGERQP
FQAALDQITGK
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacctatgttattaaccgatgtaccggatattccattaggtgacgattggttgtat
gaggcaaagtatgacggttatcgctgtattttagtttgggacaagggcaaaaatattcct
gagctgaaaagccgaaatgggaatgtattaaatgaaaaatttccagaaatcattcgtttc
tgtaagagtatttatgctgaaatcgaaccatatttaccgctgatttttgacggagaaatc
gtttatttaatcaatcattttcaaagtaaattctcgtttgtgcaaaaacgtggaaaaatg
acgaatcaaaaaaatatcgaatcaaattcaaagacatttccatgtcattatattgtgttt
gatttactgagattaaaagggaaagataagggaaatagccggttaacaacaagaaaacaa
ttattatccgatctttttgaacggctcaatttacttgacactgttcaatataatgattca
aagagacttcaagcgattgatgtatttgaaaatccgcatttactttggcaaaaagtaacg
tcccataatggggaagggatcattgcgaaaaagcgcagcagcaaatggctggaaaatacg
agaacgaaaagctggcagaaaataaaaaactggaaacatgtaaatgtcatcctcacgaaa
tttgatcaattaaacggtttttttaatggtgcaatctatcaagaagacatgcttatggaa
gtggtttcgtttaaacatggtttgtccgaggaagaaagcaaaacattgatcgcctttttt
aaatcgaaagggacagtgaaggagaaaagtatattcgagattcccccttcaatttgcgta
accgttgcctgtattgatttcgatggcagtaaattgagagagccgcgctttcattcgttc
caacattatctggacgtttccgagtgcaactggcagcaaatgcagagacaattaaacccg
attccggaaagtgtcatcgtcacccatccggacaaaccggtttttcctgctagccatatt
acaaaggatgactatttgtattatttacagaaggtagcgcccatgatgatgccttttctg
caggaccggttattgacggtcatccgttatccgcacggagtacccggtgaaagcttctac
cagaaaaactatatcgaaaacttgccggaatttatcacaactccgttagtagacgacacc
cattttatcttgtgcaataatctcgaatccctactgtggttgggaaatcagctcgctttg
gaatttcatattccgttccagccggtcagttcagaacagccgactgaaattgtatttgat
ttggatccaccttccgttcatgagtttggattggcggtagatgctgctgtaaagtttaaa
acgataatggattactttaaactgacaagctttatcaaaacgtctggaggaaagggcatg
caaatctatatcccattgccactgcacacattttcttatgaagatacgggtgtatttacc
gagtttatatgccgatttctcgtacagcaatttcctgattcgtttacaatcgagcggatg
aagaaaaacagggggaaaaggctgtatttggattatgtccagcatcgggaaggcaaaacg
attgtggcaccatattcaccacgcggcaataataaaggattaatcgccactccgttatta
tgggaagaagtaaacgagaaattaacgcctgatcttttcacgattccaaatataataaaa
cgtctggaacgcatggcggatcctttcaaaaatttcagggaagtgggtgagcggcagcca
ttccaagctgctctagatcaaataactgggaaataa
DBGET
integrated database retrieval system