Sphingobacterium siyangense: JVX97_15945
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Entry
JVX97_15945 CDS
T08059
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ssiy
Sphingobacterium siyangense
Pathway
ssiy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ssiy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
JVX97_15945 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssiy03400
]
JVX97_15945 (ligD)
Enzymes [BR:
ssiy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
JVX97_15945 (ligD)
DNA repair and recombination proteins [BR:
ssiy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
JVX97_15945 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
GH3
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
QRY55532
LinkDB
All DBs
Position
3760049..3762745
Genome browser
AA seq
898 aa
AA seq
DB search
MALDRYKEKRSAEKTPEPFGGKPEGEELRFVVQKHAASHLHYDFRLEMGGVLKSWAVPKG
PSTDPKDKRLAMMVEDHPYDYRNFEGIIPEGEYGGGTVIVWDEGTFAPLEAEGSKKEQEK
SLLKQLNSGSLKFTLKGHKLKGEYALVKTKGMGENAWLLIKHNDRYAKAADITKKDKSVI
SKKTIEQVAKSSTNIYGQEPKAKTTSRKKSGTGNEEEKAGKKEKPGAAELKALLKGTQKK
PFFTTAEPMLATLVDKAFDEPGWVYEVKWDGYRAVAFMKGKIAELKSRNDKSFDKKFYPI
HDALKAWGINAVVDGEVVVLNDKGAANFGALQNWRSEADGELLYYVFDILWLDGHDLTGL
PLIRRKEILEAVLPEDPRIMFSAGFDTSGIKFLEVAKKMGLEGIMAKRADSTYVMGDRTK
SWLKIKANRRQEVVIGGYTLNDDSSKPFSALLVGVYEGKKLTYTGKVGTGFSIQKQKEMI
ELFRPLIADRPPFDEEPDINKPSRFRQPPPHATATWLKPKLVCEVSFTEMTSDGVMRHPS
FEGMREDKSAAKVVLEKELKTEQAVQEEDMKNSRDEIIKPRGKASRKTLLNPTEETQVKK
INGRELKFTNLSKIYWPKEKVTKRDMINYYYQAAPFILPYLKDRPQSLNRFPDGIEGPSF
YQKDVSGKAPDWAETYLYHTDDEESDIDKHFLLGNNEETLLYMAGLGCIELHPWNSTTKK
PDHPTWCIIDLDPDKNSFDQVIEAAQVTRQVLTDMGIESYCKTSGSTGLHVYIPLGAKYT
YEHSKELARIIVTLVHNELPKFTTLERMKSKRKGKMYLDFLQNRPHATIAAPYSLRPKPG
ATVSMPLHWDEVKKGLKMSDFNIFNAIERMRSEGDIFKPVLGKGIDLKKILKSISEKK
NT seq
2697 nt
NT seq
+upstream
nt +downstream
nt
atggctctcgacagatacaaagaaaaacgcagcgcggaaaagacaccggaaccctttggc
ggaaagccggagggggaagagctgcggttcgtcgtgcagaagcacgcggcctcgcacctg
cattacgatttccgcctggaaatgggcggggtccttaagagctgggcagtcccgaaaggt
ccctcgaccgacccgaaggacaagcgccttgcgatgatggtggaagaccatccctacgac
tacaggaattttgaggggatcatccccgagggcgaatacgggggcggaaccgtcatcgtc
tgggatgagggaaccttcgcgccccttgaggcggagggcagcaaaaaggaacaggaaaaa
tccctgctgaaacagctcaattccggctcgctcaagttcacgcttaaaggccacaagctg
aagggcgaatatgcgctcgtgaagacaaagggcatgggcgagaacgcctggctgctgatc
aagcacaacgacagatacgcgaaggctgcggatatcaccaaaaaggacaagtccgtcatt
tcaaaaaaaacgatcgagcaggttgccaaaagctcaaccaatatctatgggcaggagccg
aaagcaaaaacgaccagccgcaaaaaaagcggaaccggcaatgaggaggaaaaggcaggc
aaaaaagagaagcctggtgccgcggagctgaaggcactgctgaaaggtacgcaaaagaag
cccttcttcacgactgcggagcccatgcttgcgacgctggtggacaaggctttcgacgag
cctggctgggtctatgaggtgaaatgggacggctaccgtgctgtggcgttcatgaaagga
aaaatagcggagctgaaatcacgcaacgacaagtcattcgacaaaaagttctacccgatc
cacgatgcgctcaaggcatggggcatcaatgccgttgtcgacggcgaggtagtcgtattg
aacgacaagggagctgccaattttggggcgctgcagaactggcgcagcgaggccgacggc
gagcttttatactacgtattcgacatattatggcttgacgggcacgacctgacgggactt
ccgcttatccgtcgaaaagaaatactggaggcggtcctgcccgaagacccgaggatcatg
ttcagcgcgggcttcgatacctccggcatcaagtttttggaagttgcaaagaaaatgggg
ctggagggaatcatggcaaaaagggcagacagcacctatgtgatgggcgacaggacgaaa
agctggctgaaaatcaaggccaaccgcaggcaggaggtggtcataggcggctatacgctc
aatgacgacagcagcaagcctttcagcgcgctgctggtgggcgtctatgaaggaaaaaag
cttacctacacaggaaaggtcggcacgggattcagcatccagaagcagaaagagatgatc
gagcttttcaggccactgatagccgacaggccaccctttgacgaggagcccgatatcaac
aagcccagcaggttccgccagccccccccgcatgccaccgcgacctggctcaagcccaag
ctcgtgtgcgaggtgagctttacggaaatgacatcggacggcgtgatgcggcatccctct
ttcgaaggcatgcgcgaggacaagagcgcagcaaaggtcgtgcttgaaaaagagctaaaa
actgaacaggcagtacaggaagaagatatgaaaaacagcagggacgaaatcataaaacca
aggggaaaggcgtcgcgcaagacgctactgaacccgaccgaggagacgcaggtaaagaag
ataaacggccgcgagctcaagtttaccaacctgagcaagatctactggccgaaagaaaag
gtgaccaagcgggacatgataaactactattaccaggcagcgccgtttatcctgccctac
ctgaaagaccggccgcagtcgctgaacaggtttcccgacgggatcgaggggcccagcttc
taccagaaggatgtttccggaaaggcaccggactgggcggaaacctacctctaccatacc
gacgacgaggagagcgatatcgacaagcatttcctgctgggcaataacgaggagacgctg
ctgtatatggccgggctcggttgcatcgagcttcatccatggaacagcacgacgaagaag
cccgaccatccgacctggtgcattatcgacctagatcccgacaagaactcgtttgaccag
gtcatcgaggccgcccaggtaaccagacaggtcctgacggatatgggcatcgagagctac
tgcaagaccagcggctcgacgggactccatgtctatatcccgctgggagccaaatatact
tacgagcactcgaaagaacttgcgcggatcatcgtgaccctggtacacaatgagctcccg
aagtttacgacgctggagcggatgaaatccaagcgcaagggaaagatgtacctcgacttc
ctgcagaacaggccccatgccaccatagcagcaccctattcgttaaggccgaagccgggc
gcgacggtttccatgccccttcattgggacgaggtgaagaaaggcctcaagatgtcggat
tttaacatcttcaacgccatcgaaaggatgcggagcgagggggatatcttcaagcccgtt
ctcggaaaggggatagacctcaaaaagatattgaaatctatcagcgaaaagaaataa
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