Sclerotinia sclerotiorum: SS1G_02231
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Entry
SS1G_02231 CDS
T01071
Name
(RefSeq) hypothetical protein
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
ssl
Sclerotinia sclerotiorum
Pathway
ssl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SS1G_02231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ssl03000
]
SS1G_02231
03019 Messenger RNA biogenesis [BR:
ssl03019
]
SS1G_02231
04121 Ubiquitin system [BR:
ssl04121
]
SS1G_02231
Enzymes [BR:
ssl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
SS1G_02231
Transcription factors [BR:
ssl03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
SS1G_02231
Messenger RNA biogenesis [BR:
ssl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
SS1G_02231
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
SS1G_02231
Ubiquitin system [BR:
ssl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
SS1G_02231
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-RING_2
Rtf2
Prok-RING_4
zf-C3HC4_3
SET_assoc
Baculo_IE-1
zf-UDP
Nup35_RRM_2
Gag_p24
FYVE
zf-C3HC4
zf-RING_5
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
5492462
NCBI-ProteinID:
XP_001596015
UniProt:
A7EA99
LinkDB
All DBs
Position
Unknown
AA seq
815 aa
AA seq
DB search
MAPQDSFIDEDEDTCPLCVEEFDLSDKNFQPCPCGYQICQFCFNNIKNNINGLCPACRRP
YDEKTIKWKVVTPEEVAQFKANVQKNAKKKAEIRQKEAQKREVESLNRKHLAGLRVVQKN
LVYVVGLSPSIREDELLQTLRGEKYFGQYGKIIKIVVSKSKQNESAQNAGSLGVYVTFAS
KLDAERCITAVNGSSNGDRILRAQLGTTKYCSAYLRNEVCTNKQCMFLHEPGDNDDSYSR
QDLSSINSVNSQRPLPPKASSSRTQAQAAPPIQQAQPLAAAAPPMAREASKDGSDSGDGP
ALPSTANWANRGVQQQRSRRGSHATSGAAPSPAISNAIPSATEAVEEETPELVEDQEESS
GEASPIEAPEPSPLIEDVSHPVEEHLGAELLRSINSDVLSWDGPKIHEDDLASFPPLFDD
HGGEKRRLMREQQQEEERLHMEQESQADVQSVPEPVEEQEPESGSLQLGGEPEDNGREIN
QPPGFQRHQSSQLPIQRGSTAGPFGPSLGQQQNYPQNISNLSSINRRSLTPLQQSQLSMF
KTPSGVPSSFMDHIPSPGGLGNPLNQNTALFQQQGHNRQSSRYSFAMDGAAGPSSIKPSA
NSKMMQQQASMMPPSSHPQQGFQSFNSSIPAPPGLSGLKSNTPPIGGGMFGQGHGFGNSM
GGGSAFGNANKENSNEMLREMLRGRPSAGGNQGIDTSKREYMFPNFLHQQFPSASSTPAP
ASNLLASLYGPQTGAFHDFGQKQKKKGKKHRHANTSSSGGGGLVDLADPSILQARMQHQQ
QSNAGVGQGLFGGQAQGGYNPNLMYGGGAGFPGRW
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atggcacctcaggatagcttcatcgatgaagatgaggatacatgcccactctgcgtcgaa
gaattcgatctatcagacaagaatttccaaccatgcccttgtggttaccagatttgtcag
ttctgcttcaacaacattaagaacaatatcaacggcctctgtcctgcctgtcgaagacct
tatgacgagaaaacaataaaatggaaagttgttacgcctgaagaagtcgctcaatttaaa
gccaatgtccaaaagaacgctaaaaagaaagccgaaataaggcaaaaagaagcccaaaag
cgagaagtagaaagtttaaatcggaagcatctagcaggtttacgagttgtacagaaaaat
ctagtatatgttgtcggccttagtccaagcatacgagaagacgaacttcttcagacttta
cgcggcgaaaagtatttcgggcaatatgggaagatcatcaagatcgtggtcagtaaatct
aaacagaacgagtcagcccaaaatgctggttctcttggagtttacgttacgtttgcttcg
aaattagatgcggaacggtgcataacagcggtcaacggttcctcaaacggtgatcgaatt
ttacgagcgcaattgggaactacgaagtactgttcagcatatctgcggaatgaggtgtgc
acaaacaagcaatgcatgttcttacacgaaccaggcgacaacgacgacagttattctagg
caagatttgtcgtccattaatagtgtgaactcccaacgacctttgccgcccaaggcatct
tcatcccgcactcaagcccaagcagcaccaccaattcaacaggcacaaccactggctgcc
gctgcaccaccaatggcacgggaagcaagtaaagatggttcggacagtggagatggtcct
gcacttccgtcaactgctaactgggccaatcgtggagtacagcagcaacgcagcagaaga
ggaagccatgccacgagtggtgctgcccctagtcctgctatctcaaatgccattccttct
gcaactgaagcagtcgaggaagaaactcctgagcttgtggaagaccaagaggaatcgtct
ggcgaagccagcccaattgaagctccagaacccagccctcttattgaggatgtgtctcat
cctgtggaggagcaccttggtgccgaactgctcaggtcgattaattctgatgtgctgagt
tgggatggccctaaaattcacgaggacgacctcgcatcattcccgccgctctttgatgac
catggtggagagaaacgccgtttaatgcgcgagcagcaacaggaggaggaacgtttacac
atggagcaggaatcgcaagctgatgttcaatcggtacctgaacccgtggaagaacaggaa
ccggaaagtggtagtctgcaattaggtggcgagcccgaagataatgggcgggagattaat
caacctcctggattccaacgtcatcaaagttcgcaactaccgatccaacgaggctccacc
gctggtccgtttggcccaagccttgggcaacaacaaaactatccccagaatatcagcaat
ttgagttctattaacagacgatctctcactccattgcaacagtctcaactttcaatgttc
aagacaccatccggtgttccatcaagcttcatggaccatattccttctcctggtggactt
ggaaatccattgaatcagaatactgcgcttttccagcagcaaggtcacaatagacaatct
tctcgatacagctttgctatggatggtgccgctggaccgtcttccatcaagccttctgcc
aatagcaaaatgatgcaacagcaagcttcaatgatgcctccttcaagtcatcctcagcaa
ggatttcagtcttttaactcttcgatcccagcccctccaggattgtcaggtctgaaatct
aacactcccccaattggcggaggtatgtttggccaaggtcatggatttggtaactcgatg
ggtggtggttcggcattcggaaatgccaacaaggagaatagtaatgagatgcttcgtgaa
atgctaaggggtcgccctagtgctggtggcaaccagggtattgatacaagtaagcgtgag
tacatgtttcctaattttcttcatcaacagttcccatctgcctcctccactccagctcct
gcttcaaaccttctggcatcgctctacggtcctcagaccggagcatttcatgacttcggt
caaaagcagaagaagaagggaaagaagcacagacatgctaacacttcctcctctggggga
ggtggcttagtcgatcttgcggacccaagtatcctgcaggcgagaatgcagcatcaacaa
cagagcaatgccggagtcggacagggactgtttggtggtcaggctcaaggtgggtacaac
cccaacctgatgtatggcggaggagcaggtttccccggcaggtggtag
DBGET
integrated database retrieval system
