Sclerotinia sclerotiorum: SS1G_13475
Help
Entry
SS1G_13475 CDS
T01071
Name
(RefSeq) hypothetical protein
KO
K14328
regulator of nonsense transcripts 3
Organism
ssl
Sclerotinia sclerotiorum
Pathway
ssl03013
Nucleocytoplasmic transport
ssl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ssl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
SS1G_13475
03015 mRNA surveillance pathway
SS1G_13475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssl03019
]
SS1G_13475
Messenger RNA biogenesis [BR:
ssl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
SS1G_13475
mRNA cycle factors
P-body specific factors
SS1G_13475
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
HTH_AsnC-type
Motif
Other DBs
NCBI-GeneID:
5481717
NCBI-ProteinID:
XP_001585591
UniProt:
A0A1D9QKQ4
A7F795
LinkDB
All DBs
Position
Unknown
AA seq
619 aa
AA seq
DB search
MATTAGSRNQTNGVLSVTATQTSGSTSKQTASKPASSKLKLIVRRLAPGLTEVEFFSVLG
DEWKVGQGKVDWFQYKLGKDSKDPSKPSRPSRAYLHLTSGDHLLPFSEVVRKSSFEDAKN
TYTDSCLIGPPSVEFAPYSRVPAGLKRRTDARAGTIDQDPEFMAFLEGLANPVTTKEIGA
DGEDPPTGKPEKVTVTPLVQFLKDKKANKTKESAAKAAKKQETPKSKAKEGSGSTDDSRK
SNKDPKTDKVAATQEAVRILNREAAKKVAATSSSAATSTSTEKNVPKLDTSKIPANERQA
VVAAHVRMLHRDLGLSPSQAHRRIKRDTASAVKAEASEKSTSTPSNTASSPSTPTTPTGP
KVPPAQPSAQSGSRRSRRGNQKNTTESSATKGPTTTASAPTTPMVLLRKFTTQQRPEQQP
STATSQSSSTPQAPPKAPPKAPPKVNPPAAPAPAAVQPQQATPNRGSKAQVDVPPKGARQ
AFIKHANPSQGVTELLLKEALEKFGKVSMVEIDKKKGFAYADFEDHEGLKKAMAANPVSV
AQGTVHVMQRKGNQLPRAGPAPRAPAPPPASPASRGGRGGAIGRRGGRNGGGRGRADAPA
ADSPKPSPIAVAPTGPAPK
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atggctactaccgcaggatctcgcaatcaaacaaacggtgttctctccgttacagctaca
cagacatcgggtagtacttccaagcaaactgctagcaagccagcaagttccaagttgaag
cttatcgtccgtagactagctccaggattgacggaggtggagttcttttctgttcttggt
gatgaatggaaagtagggcaaggaaaagttgattggtttcaatacaaattggggaaagat
tctaaagatccttccaagccatcccgaccttctcgagcatatttacacttaacaagtggt
gatcacctcttaccattttcagaagtcgtgcgaaaatccagttttgaagatgcaaagaat
acatatacagattcgtgtctcattggaccaccctccgttgaatttgcgccttacagtaga
gtccctgcaggtcttaaacgtcgtacagatgctcgggcaggaacaatcgatcaggatcca
gaattcatggcatttttggaaggattggctaatccagttactacaaaagaaatcggcgca
gatggcgaagatcctccaacaggaaagcccgagaaagttactgtgacaccattggttcaa
ttcttgaaggacaagaaggccaacaagacgaaggaatcggcagcaaaggcagcgaagaaa
caagaaactccgaagtccaaagcgaaggaaggatcaggttcgacagatgatagtagaaag
tccaacaaagatcctaagaccgacaaagtcgcggccacgcaagaggctgtcaggattttg
aacagagaagctgccaaaaaagtagctgcaacgtcctcctctgcggctacttcaacaagt
accgagaagaacgtacccaagcttgatacttctaaaattcctgctaatgaaaggcaagcc
gttgttgctgctcatgttcgcatgctacaccgtgatctcggacttagtccctcccaggct
caccgccgtatcaaacgtgatacagctagtgcggtaaaagctgaggcttctgaaaagtcc
acgtctactcctagtaataccgcatcttctccatctactcctacaacacccactggtccc
aaagtacctccagcccagcctagtgctcaatcaggtagccgaagatctagaagaggtaac
caaaagaatactactgaatcttctgctaccaaggggccgacaaccactgcttcggcccca
actacaccaatggtcctactacgaaagttcaccactcaacaacgacctgaacaacaacca
agtaccgcgacttctcaatcttcatctacacctcaagctccaccgaaagcgcctccgaaa
gcgcctccgaaagtcaatccccctgcagctccagctccagccgcggtgcaacctcaacaa
gccactcctaatcgaggatcaaaggctcaagtggatgttccacctaaaggtgcccgacaa
gctttcataaaacatgccaacccatctcaaggggtaactgaattattgttaaaggaagca
ttggaaaaatttggtaaagtttccatggttgagatagataaaaagaaaggcttcgcatat
gcagattttgaagatcatgaaggtctaaagaaagcaatggctgcaaaccccgtttccgtc
gcacagggaactgttcacgttatgcaacgaaagggaaatcaattaccacgtgctggccca
gctcctagagctcctgctcctccacctgctagtccggcttctcgtggtggtagaggtgga
gctataggcaggaggggtggtagaaacggtggtgggagaggtcgcgcagatgctccggct
gcggattccccaaagccttctccaattgctgttgcccccacaggaccagctccaaagtga
DBGET
integrated database retrieval system
