Shigella sonnei Ss046: SSON_3677
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Entry
SSON_3677 CDS
T00274
Name
(GenBank) conserved hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ssn
Shigella sonnei Ss046
Pathway
ssn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ssn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SSON_3677
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ssn03019
]
SSON_3677
03400 DNA repair and recombination proteins [BR:
ssn03400
]
SSON_3677
Enzymes [BR:
ssn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SSON_3677
Messenger RNA biogenesis [BR:
ssn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SSON_3677
DNA repair and recombination proteins [BR:
ssn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SSON_3677
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
MarR_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AAZ90224
ShiBASE_China:
SSO3677
UniProt:
Q3YW88
LinkDB
All DBs
Position
complement(3854387..3856198)
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AA seq
603 aa
AA seq
DB search
MEKHGAELLLQRMLSNTSATFREGQWEAIDAVVNQRRKLLVVQRTGWGKSAVYFIASKIF
RDRGAGPTIIISPLLALMRNQVAAAERLGITAETLNSTNREEWQRISDKLLRGGVDCLLI
SPERLANQDFLETANTPVLGTTATANNRVVEDIRQQLGDIVIQRGTLARESLALDALVLG
EQSSRLAWLATVIPQFSKSGIVYTLTTRDAELVAEWLRTNGISAFAYYSGVTCEGAEDSN
TAREYLEQALLANKIKVLVATTALGMGFDKPDLGFVIHYQMPGSIVGYYQQVGRAGRAID
SAVGILLCGGEDRAIHKFFRESAFPAEAQIHEILNVLSENDGLTLRGIEQRTNLRYGQIE
KALKLLVAENPSPVVYTEKLWRRTIVSFSPDHERINHLMNQRKNELADVESYITTKECKM
QFLRRALDEPSAERCGKCSSCLQHPLLSPDIDSGLLHAANLFIKHADLPLNLNKQVASGA
FTQYGFKGNLPAGLQGSTGRVLSRWGDSGWGKQVAQEKKTGRFSDELVEACAEMVRQRWN
PHPEPTWVCCVPSLKHLDLVPDFARRLAAKLGLPFIDAIEKVVDNPPQKMQQNRFGDAAN
LLI
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggagaaacacggagctgaattgctgttacagcggatgttaagtaacaccagcgctact
ttcagggaagggcaatgggaagctatagatgcggtggttaatcagcggcgaaaactgctg
gttgtccaacgcactggctgggggaaaagtgccgtgtacttcatcgccagtaaaatcttc
cgcgatcgcggcgctggcccgacaattatcatctctcctttgcttgccctgatgcgtaac
caggttgccgccgctgaacggttaggtattacggctgaaacgttgaattctacaaacagg
gaagaatggcagcgcattagcgataagttgctgcggggtggtgtagattgtctgctgatt
tcacctgaacggttggcgaatcaggattttcttgaaactgcgaatacccctgttctgggt
acaaccgcgacagcgaataatcgtgtcgttgaggatatccgtcagcaattgggtgacatt
gtgattcagcgtggaacgctggctcgcgaaagtttggcgcttgatgccttagtcttaggt
gaacagtcatcccgtctggcatggttagcaacggttatccctcagttttccaaatcggga
attgtttataccctgactactcgcgatgccgaacttgtcgccgagtggttaaggacaaat
ggtatcagtgcatttgcttactacagcggcgtgacttgtgaaggcgcggaagattctaat
actgccagggaatatctggagcaggcgctgctggcaaataaaatcaaagtgctggtcgcg
acgacggcattaggtatggggtttgataaacctgatttaggtttcgtcattcattatcaa
atgccggggtctattgtcggttactaccaacaggtagggcgtgccgggcgtgctatagat
tccgcagttggcatattgctttgtggtggtgaagaccgcgctattcataaattcttccgt
gaaagcgcctttcctgcggaggcgcaaattcatgaaatactcaacgtacttagcgagaat
gacggtcttaccctacgaggcattgaacaacggacgaatctccgttatgggcaaatagaa
aaagcactgaaattattggtagctgaaaatccatcgcctgtggtgtataccgagaaatta
tggcgcagaactatcgtcagtttctctcctgaccatgaacgaattaaccatttgatgaat
cagagaaaaaatgagctggcagatgttgaaagctatatcacgaccaaggagtgcaaaatg
caatttctgcgccgcgcactcgatgagccaagtgccgaacgttgtggtaaatgtagcagt
tgtcttcagcatccgttgttgtcgcccgatattgatagcggcttactccatgcggcaaat
ttatttattaaacacgctgacctgccattaaatctcaataaacaggtagcatctggagct
tttacgcaatacggatttaaagggaacttgcctgcgggtttacaaggatctacggggcga
gtcctttctcgttggggagattccgggtggggaaagcaggtagcacaggagaaaaaaacg
gggcgattcagtgatgagctggtggaggcatgtgcggaaatggttcgccaacgctggaat
ccgcatcctgaaccaacctgggtatgctgcgttccttcattaaagcacctcgacctggtt
cctgattttgcccggcgactggcggcgaaacttggcttaccttttattgatgccattgaa
aaagtcgtggacaatccaccgcagaaaatgcagcaaaaccgtttcggtgatgctgccaac
ttactgatttag
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