Shewanella spartinae: K0I31_08455
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Entry
K0I31_08455 CDS
T09209
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sspa
Shewanella spartinae
Pathway
sspa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sspa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K0I31_08455 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspa03400
]
K0I31_08455 (mfd)
Enzymes [BR:
sspa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K0I31_08455 (mfd)
DNA repair and recombination proteins [BR:
sspa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K0I31_08455 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QYJ95371
LinkDB
All DBs
Position
complement(1873147..1876629)
Genome browser
AA seq
1160 aa
AA seq
DB search
MIAFSILTPPKVKGVKSPQTLSQLTGAAQAISLAKLCEQYSGMTLVVTPDTPSALRLEAE
LGYLLAPKSIPVMLFPDRETLPYDSFSPHQDLVSQRLETLSRIPSAGHSLVIVPMSTLMV
KLPPQSFLTGNVLLLSKGDNYPLEAVRSQLVNTGYHHVEQVYEHGEFAVRGSIIDLFPMG
AQSPYRIELFDDEVESIREFDPETQRSSGEIESIRLLPAKEFPTNDAAIEGFRQRYRRQF
EVVVKEPESIYQMVSRKVMPAGIESYLPLFFDETASLFDYLPGECQLVQVGDLENAAKHH
LQEINQRYENRRVDPLRPLLPPKDLYLLTEQVFEAFKQLPRFLVKGDEATGTSVVAQLEA
LPNIAANHKLKQPLISLKEFADGGTPILFCVESEGRREALLELLAKIEIKPALLDHLESF
SHKPQPFGLIVAPLSQGAIYHPKKGPSWALVCETELFGQRIAQQRRRDKQRQVSQDALIK
DLAELKVGQPIVHLDHGVALYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVASLNLISQY
SVGADDAPQLNKLGNESWTKAKRKAIEKIRDVAAELLDVYARRQARPGEACRLDREEYAQ
FAGSFPFEETVDQETAIDAVLTDMCSPISMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQV
AILVPTTLLAQQHYENFKDRFADWPIKIEVMSRFKTAKEQQAVLKQLELGQVDIVIGTHK
LLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANIDILTLTATPIPRTLNMSMSGMRD
LSIIATPPAKRLAVKTFVREYDDATVREALLREILRGGQVYFLHNSVETIEKRAREIEAL
LPEARVVTAHGQMRERDLEKVMSDFYHQKYNVLVCTTIIETGIDVPSANTIIIERADNFG
LAQLHQLRGRVGRSHHQAYAYLMTPHPKRMTKDAIKRLEAIGTLEDLGAGFMLATQDLEI
RGAGELLGDEQSGHISKIGFTLYMEMLEDAVKSLKEGKEPSLDQMLRGQCEIDLRIPALL
PEDYVGDVNIRLSLYKRIANCATAQALDELKVELIDRFGLLPQATKNLMEVSLFKHQATA
LGIAKIEMHAKGGSLEFNNDHCVDPGFIIGLLQSQPQNYRMDGPSKLKFLMPTETDKDRL
ALLSLIISQLMQHRLGEPRV
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgattgctttttccatcctcacaccacctaaagtcaaaggggttaagtcgccccaaacc
cttagccagttaaccggcgccgcccaggcgatcagcctggctaagctgtgcgagcagtat
agcggcatgaccttagtggtgacgccagacacgcccagcgcgctcaggctagaggcagag
ctaggctacctgttagcaccaaaatcgatccccgtgatgctgttccccgaccgggagacc
ttgccctacgacagcttctcaccccatcaggatctggtatctcaacggcttgagacccta
tcgcggatcccaagcgccggccatagcctggtgattgtgcccatgagcaccctgatggtg
aagttgccgccgcaatcattcttaaccggcaacgtcttgctgctcagcaagggcgacaat
tatcccctggaagcggtgcgcagccagctggtcaataccggctatcatcacgtggagcag
gtatatgagcatggcgagtttgccgtgcgcggctctatcatagatctcttccccatgggc
gcccagagcccctatcgcatcgagctgttcgatgatgaggtcgaatcgatccgcgaattt
gacccggaaacccaacgctccagcggcgagattgaatcgattcgcctgctgccggccaag
gaattcccgaccaatgacgccgccatcgaagggtttcgccaacgttaccgccgccagttt
gaggtagtggtcaaggagccggagtccatctatcagatggtgagccgcaaggtgatgccc
gccgggatcgagagttacctgcccctcttcttcgatgagacggcgagcctgttcgactat
ctgcccggcgagtgccaattggtgcaggtgggcgatcttgagaatgctgccaaacaccac
ctgcaggagatcaaccagcgctatgagaaccgccgggtcgatcccctgaggccactgcta
ccgccaaaggatctctacctgctgaccgaacaggtcttcgaggcctttaagcagctgccg
cgcttcttggtcaagggcgatgaggccacaggcaccagcgttgtggcgcagctcgaggca
ctgcctaacatcgccgccaaccataagctgaagcagccacttatcagccttaaagaattt
gccgatggcggcacgccaattttattctgcgtcgaatcggaaggccgccgcgaggcgctg
ctggaactactggccaagatagagattaaacctgcgctgctggatcatctggagagcttc
agccataagcctcagccctttggcttgatcgtcgcgccgctgtctcaaggcgccatctat
caccccaagaagggccctagctgggcactggtgtgtgaaaccgagctgtttggtcagcgc
atcgcccagcaacgccgtcgcgataaacagcgtcaggtaagccaggatgcactcatcaag
gatctggccgagctcaaagtcggtcaacccatagtccatctggatcacggcgtcgccctc
tatcaagggctggaaaccctggacacgggcggcctggtcgccgagtatctaaaactggaa
tacgccggcggtgacaagctctatgtgcctgtcgcctccctcaacctcattagccagtac
agtgtcggcgccgatgatgcgccacagctcaacaagctgggcaacgagagttggaccaaa
gccaaacgcaaggcgatcgagaagatccgcgacgtggccgccgaactgttagatgtctac
gcccgccgtcaggcccgccccggcgaggcctgccgattagatcgcgaagagtacgcccag
tttgccggcagtttccccttcgaagagacggtagatcaggagaccgccatcgacgccgtg
ctcaccgacatgtgcagccccatctcgatggatcgtctggtgtgtggcgacgtcggcttc
ggtaagactgaggtggcgatgcgcgccgccttcgtggcggtcaacgacggcaagcaggtg
gccatcttggtgcccaccacgctactggctcagcagcactatgaaaacttcaaagacagg
tttgccgactggcccatcaagatagaggtgatgtcacgctttaagaccgccaaggagcaa
caggcggtgctcaagcagctggagcttggccaggtggatatcgttatcggtacccataag
ctactccagtctgaggccaagtttgaaaacttaggcctgcttatcatcgacgaggagcac
aggttcggcgtgcgtcagaaggagaagatcaaggccctgcgcgccaatattgatattttg
accctgacggcaaccccaatcccgcgtaccctcaacatgtcgatgtctggcatgcgcgac
ctctccatcatagctacgccgccggccaagcgcctggcggttaagaccttcgtgcgcgaa
tatgatgatgccacggtacgcgaggcgctgctgcgtgagatcttaaggggcggccaggtc
tattttctccacaacagtgtcgagaccatagagaagcgcgcccgtgagattgaggcgcta
ctgcccgaggcgcgagttgtcaccgcccatggtcaaatgagagaacgcgaccttgaaaag
gtgatgtctgacttctatcaccagaaatacaatgtgctggtgtgcaccaccatcatagaa
actggcatcgatgtgcccagtgccaacaccatcatcatagagcgagccgataacttcggc
ctagctcagctgcatcagctcaggggccgcgtgggacgctcacatcatcaggcctatgcc
tatctgatgacgccccatcctaaacgcatgaccaaggatgccatcaagcgtctggaggcc
attggcacgctggaagatcttggtgccggcttcatgctggcgactcaagatctcgagatc
cgcggcgcgggtgagctcctgggcgatgagcagagcggtcatatctctaaaataggtttt
accctctacatggagatgctggaagatgcggtgaagtccctcaaggagggcaaggagcct
tcgctggatcagatgctaaggggtcaatgtgagattgacctgcggatccctgccctgcta
ccggaagattatgtgggcgatgtcaacatccgcctgtcgctctataaacgtatcgccaac
tgcgccaccgcccaggcattggacgagttaaaggtcgagctgatcgatcgcttcggcctc
ctgcctcaggccacgaagaacctgatggaagtctccctgtttaagcaccaggcaacggcg
ctcggcatcgccaagatagagatgcacgccaagggcggcagcctggaatttaataacgat
cactgtgtagatcctggctttatcatcggactattacagagtcagccacaaaattatcgt
atggacggcccaagtaagttaaaattcttgatgccgacagagacagacaaggataggtta
gccctgttatccctgatcatctctcaactcatgcaacatcgccttggagaaccgcgtgtt
taa
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