Streptomyces spectabilis: CP982_18335
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Entry
CP982_18335 CDS
T07323
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sspb
Streptomyces spectabilis
Pathway
sspb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sspb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CP982_18335 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspb03400
]
CP982_18335 (mfd)
Enzymes [BR:
sspb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CP982_18335 (mfd)
DNA repair and recombination proteins [BR:
sspb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CP982_18335 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
UB2H
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QEV60439
UniProt:
A0A5P2XAY1
LinkDB
All DBs
Position
complement(4247144..4250683)
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AA seq
1179 aa
AA seq
DB search
MTLHGLLDAVVKDAALTEAVKAAADGNRHHIDLVGPPAARPFAVAALARETRRTVLAVTA
TGREAEDLAAALRTILPPEGVAEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPSTDGA
DPETGPVRVVVAPVRSVLQPQVKGLGDLEPVALRTGRSADLNDVVDALGAAAYSRVELVE
KRGEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRE
LLLTEDVRARARELAEAHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPEGSM
AVVCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWGIADVRDRARELG
MMWWSVSPFAADLDADDDTLTLGMHAPETYRGDTAKALADTKGWLADGWRTVYVTEGHGP
AARTVEVLGGEGIAARLDAELDGISPSVVHVACGSIDYGFVDPKLRLAVLTETDLTGQKA
AGKDGQRMPARRRKTIDPLTLEPGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPA
KRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLY
SARMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGY
GKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFTERYGQFPVNVRALSRFQTDTES
KATLEGLKDGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVL
TMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQV
FYIHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVE
SGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLAT
IAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRKSLEG
GEAEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEDDVKAVREELTDRYG
KLPEPVENLLLVAGLRMLARACGVGEIVLQGTNIRFAPVELRESQELRLKRLYPGSVIKA
ATHQVLVPRPKTAKVGGKPLVGRELLGWVGEFLASVLGS
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgaccctgcacggactgctggacgccgtcgtcaaggacgcggccctcaccgaagcggtg
aaggccgccgcagacggcaaccggcaccacatcgacctcgtcggtcccccggccgcccgg
cccttcgccgtggccgcgctcgcgcgtgagacacggcggaccgtgctcgccgtgacggcg
accggccgggaggccgaggacctggccgcggcgctgcgcacgatcctgccgccggagggg
gtggccgagtacccgtcgtgggagacgctgccgcacgagcggctgagcccccgcagcgac
accgtgggccgccgcctggccgtcctgcgccgtctggcgcacccgagcaccgacggcgcc
gacccggagacgggccccgtgagggtggtcgtggcgcccgtgcgctccgtgctccagccg
caggtcaaggggctgggcgacctggagcccgtggcgctgcgcacggggcggtcggccgac
ctgaacgacgtggtcgacgcgctgggcgcggccgcgtactcccgtgtcgagctggtcgag
aagcgcggcgagttcgccgtgcgcggcggcatcctcgatgtcttcccgcccaccgaggag
cacccgctgcgggtggagttctggggcgacgacgtcgaggagatccgctacttcaaggtc
gccgaccagcggtccctggaggtcgccgagcacggcctgtgggcaccgccgtgccgggag
ctgctgctcaccgaggacgtacgggccagggcgcgggagctcgccgaggcgcaccccgag
ctgggcgagctgctcgggaagatcgccgagggcatcgcggtcgagggcatggagtccctc
gccccggtgctcgtggacgacatggagctgctgctcgacgtgctgcccgagggctcgatg
gccgtcgtgtgcgacccggagcgggtgcgcacccgggccgccgacctggtggcgacgagc
caggagttcctccaggccagctgggcggccacggccggcggcggcgaggccccgatcgac
gtgggcgcggcctcgctgtggggcatcgccgacgtccgggaccgggcccgggagctgggc
atgatgtggtggtcggtgagcccgttcgcggccgacctcgacgcggacgacgacaccctc
acgctcggcatgcacgccccggagacctaccgcggcgacacggcgaaggccctcgccgac
accaagggctggctggccgacggctggcggacggtgtacgtcacggaggggcacggcccg
gccgcccgcaccgtcgaggtgctcggcggcgagggcatcgcggcccgcctggacgcggag
ctcgacgggatcagcccgtccgtggtgcacgtggcctgcggctccatcgactacggcttc
gtcgacccgaagctcaggctcgccgtcctgacggagaccgacctcaccggccagaaggcc
gcgggcaaggacgggcagcgcatgcccgcccgccgccgcaagaccatcgacccgctcacc
ctcgaaccgggcgactacatcgtccacgagcagcacggcgtcggccgttacatcgagatg
gtgcagcggacggtccagggcgcgacgcgcgagtacctggtcgtcgagtacgcgcccgcc
aagcgcggccagcccggcgaccgcctctacatccccaccgaccagctggagcagatcacc
aagtacgtgggcggcgaggcccccacgctgcaccggctcggcggcgccgactggaccaag
accaaggcccgcgcgaagaaggcggtcaaggagatcgccgcggacctgatcaagctgtac
tcggcgcggatggcggctcccggccacaccttcggcccggacacgccctggcagcgcgag
ctggaggacgcgttcccgtacgcggagacgcccgaccagctcacgacgatcgccgaggtc
aaggaggacatggagaagtcggtcccgatggaccggctcatctgcggcgacgtcggctac
ggcaagacggagatcgcggtgcgcgccgcgttcaaggccgtccaggacggcaagcaggtc
gcggtcctcgtgcccacgacgctgctcgtgcagcagcacttcggcacgttcaccgagcgg
tacggccagttccccgtcaacgtgcgggcgctcagccgcttccagaccgacaccgagtcg
aaggcgaccctggagggcctcaaggacggctccgtcgacatcgtcatcggcacccaccgc
ctgttctcctccgagacgaagttcaaggacctgggcctggtcatcgtcgacgaggagcag
cgcttcggcgtcgagcacaaggagcagctgaagaagctgcgcgccaacgtcgacgtcctg
acgatgtcggccacccccattccccgtacgctcgaaatggccgtcaccggcatccgcgag
atgtcgacgatcacgacgccgccggaggagcgccacccggtgctgaccttcgtggggccg
tacgaggagaagcagatcggcgcggccatccggcgcgaactcctccgcgagggccaggtc
ttctacatccacaaccgggtggagtccatcgaccgggccgccgcccgcctccgtgagatc
gtgccggaggcgcggatcgccaccgcccacggccagatgtccgagcaggccctggagcag
gtcgtggtggacttctgggagaagaagttcgacgtactcgtgtcgacgacgatcgtcgag
tccggcatcgacatctccaacgccaacaccctgatcgtggagcgcggcgacaacttcggc
ctgtcccagctgcaccagctgcgcggccgggtcggccgcggccgcgagcgcggctacgcg
tacttcctgtacccgccggagaagccgctcacggagaccgcgcacgaacggctcgcgacg
atcgcccagcacacggagatgggcgcgggcatgtacgtggcgatgaaggacctggagatc
cgcggcgcgggcaatctgctcggcggcgagcagtccgggcacatcgcgggcgtcggcttc
gacctgtacgtgcgcatggtgggcgaggccgtcgccgactaccgcaagtccctggagggc
ggcgaggccgaggaggagccgcctctggaggtgaagatcgagctgccggtcgacgcccac
gtcccgcacgactacgcgcccggcgagcggctccgcctccaggcctaccgcgcgatcgcc
tccgccaattcggaggacgacgtcaaggcggtccgcgaggagctcaccgaccgctacggc
aagctgccggagccggtcgagaacctgctcctcgtggcgggcctgcgcatgctggcgcgg
gcctgcggcgtcggcgagatcgtgctccagggcacgaacatccgcttcgcgccggtggag
ctgcgggagtcccaggagctgcgcctgaagcggctctaccccggctcggtcatcaaggcg
gccacgcaccaggtcctcgtgccgcggccgaagaccgcgaaggtcggcggcaagccgctg
gtcgggcgggaactgctcggctgggtgggggagttcctggcctcggtcctcgggtcgtag
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