Streptomyces spectabilis: CP982_33160
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Entry
CP982_33160 CDS
T07323
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sspb
Streptomyces spectabilis
Pathway
sspb03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sspb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CP982_33160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspb03400
]
CP982_33160
Enzymes [BR:
sspb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CP982_33160
DNA repair and recombination proteins [BR:
sspb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CP982_33160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QEV65062
UniProt:
A0A5P2XRI2
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All DBs
Position
7603120..7604052
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AA seq
310 aa
AA seq
DB search
MRAGRRTVALHRPRKPFIPEGADAADGGAAYTKGDLFDYYRSVAPFMLPHLRGRPLMLER
HPDGVPGPRFMQKDTPDHYPDWISRAEVAKEGGTVTHTVCDDSATLLYLADQACVTLHRW
QSRVGRVDRPDRMVFDLDPAGDGAPQEVYGPVREAARLLGELLDQVGLPSAVMTTGSRGL
HVVVPVNGRHHVDDVRDFAKEVTDVMAAAHPDRFTTAVRKKDRGGRLYLDVLRNGYAQTA
VAPFSVRARPGAPVAVPLAWEQLDAPGTHAARWTITDAVAQARTDPWAGLLRSPRALGPA
RRKLRALRRG
NT seq
933 nt
NT seq
+upstream
nt +downstream
nt
gtgcgggcgggccgccgcaccgtcgcactccacaggccccgcaagcccttcatccccgag
ggcgccgacgcggccgacggcggcgccgcctacaccaagggcgacctcttcgactactac
cggtccgtcgcccccttcatgctgccgcacctgcgcggccgccccctgatgctggagcgg
cacccggacggggtgccggggccccgcttcatgcagaaggacacgccggaccactacccg
gactggatcagccgcgccgaggtggccaaggagggcggcaccgtcacgcacaccgtgtgc
gacgacagcgccacgctgctctacctcgccgaccaggcctgcgtcaccctgcaccgctgg
cagtcccgcgtcggccgcgtcgaccggcccgaccgcatggtcttcgacctggatccggcg
ggcgacggagccccgcaggaggtgtacgggccggtgcgcgaggccgctcggctgctcggc
gaactcctcgaccaggtgggcctgccgtccgccgtgatgacgaccggctcgcgcggcctg
cacgtggtcgtgccggtcaacggccgccaccacgtcgacgacgtccgcgacttcgccaag
gaggtcaccgacgtcatggccgccgcgcacccggaccgcttcaccaccgcggtccgcaag
aaggaccggggcgggcggctctacctcgacgtgctgcgcaacgggtacgcgcagacggcc
gtcgcgcccttctcggtgcgggccaggcccggcgcgccggtggccgtgccgctcgcctgg
gagcagctcgacgcccccggcacccacgccgcccgctggaccatcacggatgccgtggcg
caggcccgcacggacccctgggcgggcctgctgcgctcgccccgcgcgctcggcccggcc
cgccgcaagctccgggcgctgcgccgcggctga
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