Sphingobacterium spiritivorum: I6J01_08845
Help
Entry
I6J01_08845 CDS
T07566
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sspi
Sphingobacterium spiritivorum
Pathway
sspi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sspi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
I6J01_08845 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspi03400
]
I6J01_08845 (ligD)
Enzymes [BR:
sspi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
I6J01_08845 (ligD)
DNA repair and recombination proteins [BR:
sspi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
I6J01_08845 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QQT37492
LinkDB
All DBs
Position
2125275..2127755
Genome browser
AA seq
826 aa
AA seq
DB search
MDKLAQYHKKRNFKETVEPKGSANSEKPEKLRFVVQRHHASRLHYDFRLEMGGVLKSWAV
PKGPSLFPQDKRLAVQVEDHPVDYASFEGEIPKGNYGAGTVSIFDEGYFHPLGDGNEESL
LDDVEQGSVKVILHGKILKGEFALVRIKDSDGKSWLLIKHKDKFAVDRPYNAEDYVSKKI
KDQGEQYKKKSAKTLKEKSKLSASPAKNAEVELLEPLPMLTRLATDLPDEEGWLYEKKYD
GFRIIAVKTAKKVVLYSRNGKQMNKLFPSVVKALSALDRDVWLDGEVVIEDKNGKAQFQL
LQSGEPLPPSFVIRYYIFDILSLDENDLSQYPLKERKDLLQLLLKGVKKSVIMPVEALTG
TVSKIRKQAEKQGWEGVIAKDTESLYHAGKRSSQWLKVKFRKTQEAVICGYTKPQGSRSF
FGALVLGYYEKDHWIYLGNCGTGFTEDILKDIFDILKDTKKTDKPFDAHVVVAKEKEVTW
VKPAVVCEVYYSEWTADRHLRHPVFKGLRMDKNVKDVQIERDEQELVKDKVVTVDRHQVK
LTNLDKIYWPSDGYTKGQLLTYYEKYGDLALPYLKDKPISMHRFPNGIEEKSFFQKDVDV
KQIPGWLRTVPMYSESTDKDIDYLICNNKATLLYIANLGSIEINPWLSTYKKKEYPDFAV
LDLDPNGADFEVLIDVARTAHRLFKQAGVTDYIKTSGSTGLHIYLYVNKKYTYDVVRDFI
QFIAEMIHEEHPDTTSLIRDPRKRKGLIYLDYLQNRRGQTIAAPYSVRPKESATISTPLH
WKEVKGGLDIRQFNITSIADRLEKTEDPWADIFDHPADIKKALEKF
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atggataaattggcgcaataccataagaagcgtaatttcaaggaaacggtggaaccaaaa
ggttctgcaaattcggagaaacctgagaaattgcgatttgttgtccagcgacatcatgcc
agtcgtctgcattatgactttcgtctggagatggggggagtactcaaaagctgggcagta
cctaaaggtccttctctttttccgcaggataagagacttgcggtgcaggtggaagatcat
cctgttgattatgccagctttgaaggagagattcctaaaggaaactacggtgccgggact
gtttctatatttgacgaaggttatttccaccctttgggggacggtaacgaggaaagtctg
ttggatgatgtggaacagggttcagttaaagttattcttcacggaaaaatattaaaaggg
gagtttgccttagtccgtataaaagatagtgatggtaaatcctggctgttgatcaaacac
aaagataagttcgccgtagatagaccgtacaatgctgaagactatgtcagtaagaagata
aaggatcaaggagaacagtataaaaagaagtctgcaaagacattaaaagagaaatcaaaa
ttgtctgcttcacctgctaaaaatgcagaggttgaactgctggaacctcttcccatgtta
accagactcgctacggatttaccggatgaagaggggtggttgtatgaaaaaaaatatgat
ggtttccggataattgctgttaagaccgccaaaaaagttgtgttgtactcccgtaatggg
aaacagatgaacaaactatttccgagtgtagtgaaagcgttgtcggctctggaccgcgat
gtctggctggacggggaagttgttattgaagataaaaacgggaaagctcagttccagctt
ttgcagagtggagaacctttgccaccttctttcgtaattcggtattatatttttgatatc
ctgagtctggatgaaaatgacctgagtcaatatccattgaaggagcgaaaggatctgctt
caattactattaaaaggggtgaaaaaatctgtaataatgcctgttgaagctttgacagga
acggtttcaaaaatcaggaaacaggctgaaaagcagggttgggaaggagtcatagcaaaa
gatacggagagtttgtaccatgccggaaaacggagtagccagtggcttaaagttaaattc
cggaaaactcaggaagcagtgatctgcggatatacaaagcctcagggtagccgttccttt
tttggcgctttagtgttgggatattacgaaaaggatcattggatatatctagggaattgt
ggaacaggctttacggaggatattttaaaagatatttttgatatactaaaggatacgaag
aagaccgataaaccttttgatgcacacgtggtagtagctaaagaaaaggaggtcacgtgg
gtgaagcctgctgtggtgtgtgaagtctattattcggaatggactgcagacaggcatctt
cgtcatcctgtttttaaaggattacgtatggataagaatgtgaaggatgtacagatagaa
cgggatgaacaagagttggtgaaagataaggttgttacagtcgaccgtcatcaggtaaag
cttactaatctggacaagatatattggccctcagatggatatactaaggggcagttgtta
acatattatgagaaatacggggatcttgcattgccctatctcaaagataaaccgatttcc
atgcaccgtttcccaaatggtatagaagaaaagagtttttttcaaaaagatgtagacgta
aagcagattcctggctggttgcgcacagttcccatgtattcggaaagtacagataaggac
atcgattatctgatctgtaataataaggcaactctgctttacattgcaaatttaggatct
atagaaattaatccctggctgtctacctataaaaagaaagaatatccggactttgctgtg
ttggatctggatcccaacggagctgactttgaagttttgattgatgttgccagaactgcc
catcgtctctttaagcaggctggtgtcacagattatattaagacatccggttctacaggc
ttgcacatatacctttatgtaaataaaaaatatacttatgatgtagtccgtgattttata
cagtttatcgcagagatgatccatgaggaacatccggatacaactagtctgatcagggat
ccccggaaaaggaaaggtctgatctatctggattatctgcagaaccggcggggacaaact
attgcagctccatattctgtccgtccgaaggaaagtgcaactatcagtacgcctttgcat
tggaaagaagtgaaaggagggttggatatcagacaatttaatattacttctattgctgat
cgtctggaaaaaacggaggatccatgggcagatatttttgatcatcctgccgatatcaaa
aaggcattagaaaaattttaa
DBGET
integrated database retrieval system
