Salvia splendens (scarlet sage): 121751473
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Entry
121751473 CDS
T07627
Name
(RefSeq) DNA ligase 4-like isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
121751473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspl03400
]
121751473
Enzymes [BR:
sspl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121751473
DNA repair and recombination proteins [BR:
sspl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
121751473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
121751473
NCBI-ProteinID:
XP_042002156
LinkDB
All DBs
Position
10:complement(20632186..20645030)
Genome browser
AA seq
1221 aa
AA seq
DB search
MSATKFSVMVSLFNWMQKSKSSSLKRSKFRKFLDTFCRPQNGADYFAAIRLILPPLDRER
GSYGLREHVLATCLIDALGISRDSPDSQRLLNWRKGGAKSGAFAGNFALVAAEVLQRRQG
MSSGDLTILELNELLDRLATSDNRPEKISVLSELIRKTNVQEMKWIIMIILKDLKLGISE
KSIFHEFHPDAEDLFNVTCDLKLVCEKLQDRSQRHKRQDIEVGKPVRPQLALRVSNAAAA
WKKLHGKEVVVECKFDGDRIQIHKNGADIKFFSRNFLDHPEYGYGMSNFIRENILVDRCI
LDGEMLVWDKSANRFAEFGSNQEIAKAAKDGLDSDRQLCYVAFDILYAGDTSVIHQSLKE
RHQLLQQFVKPIAGCLEILVPNGGLNTHRPAGEPCWSLIVHDVDGIERFFKETIDNRDEG
IVLKDLGSKWEPSDRSAKWMKLKPDYIRAGSDLDALIIGGYYGSGRHGGEVAQFLVGLAE
RPSPNAYPKRFLSFCRVGTGLSDEELNTVVTKLKPYFSKYEYPKKLPPNFYQVTNNSKER
PDVWVESPEKSIIVSITSDIRTVRSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFVEL
VHSSNGTMQRAMDDAVIPENNPRRKKLSRGTKKYVSVVPSHFIQTDVSGVKGETSIFSNM
IFYFVNVPILHSLDSLHKLVVENGGTFSMNLNSTVTHCIASESKGIKFQAAKRQGDVIHY
SWLLECCTQKQSLPLHPKYFLFLSEETKKKLEEEVDEFSDSYFLDLNVTELEQILNNINK
IEDSKAIEYCKKFCPREEWVRFHGWRVYFHLPRQSLKYRNWEVPFELAIRRMKVAICTGG
GSIADTLSHATHLVIVCSPELGFDLDTLLNSFSEAQRLLLHRRSLQIVKSQWLDDCFERN
QKLPEDIYNLKPLQFQQVSSGESDEHKLVGEENDSLSRDASSSFGGVREENAAPHKPRVV
SLPDRGTKRRRGGPTGTSTGKRKPLANLPQKTRPRAGKKPAKISEYESDNDASSGDMAHF
EVSSADCGSSAKVDSRKRAALNQPRRARAARLRNKPVEINDNESDEGAAAAVDEKTTVGN
FKPNPTTNERLRDTSSQQPVPDLHQTEAVKGPKSDTGKAVEQEIAEQSDYKARFDKSGVG
QSSSKNPSEEYVDPVQSMLLSMLPGLATNKVESVGPVREEAGTRVPDPVNEEYKVGMDAE
NKAVKKRKVSYKDMASELLKD
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccactaagttcagtgtgatggtgagcctcttcaactggatgcagaagagcaag
tcctcctccctcaagcgctccaaattccgcaagtttctcgacacgttctgccgcccccaa
aacggcgccgactacttcgccgccatccgcctcatcctcccccccctcgaccgcgagcgc
ggctcctatggcctccgcgagcacgtcctcgccacctgcctcatcgatgccctcggcatc
tcccgcgactctcccgactcccagcgcctcctcaactggcgcaagggcggcgccaagtct
ggtgccttcgctggaaacttcgctctcgtcgccgccgaggtgcttcagcggaggcaggga
atgtcttcaggggaccttactatactagagttaaatgaactacttgatcgtttggccact
tctgataatagaccagaaaagatttctgttctttccgaactgataaggaaaacaaatgtt
caagaaatgaagtggataatcatgataattctcaaagatcttaagctggggataagtgaa
aagagcatatttcatgaatttcaccctgatgctgaggacttgttcaatgtcacctgtgat
ctaaaactagtttgtgaaaagttgcaagatcgcagtcagcggcataagcgacaggacatt
gaagttggcaaacctgtccgacctcaactagctttgagagtgagcaatgcggctgctgcc
tggaaaaagcttcatggaaaggaagtagtcgttgagtgcaaatttgatggtgatcgcatc
caaatccacaaaaatggagctgatataaaatttttctcaaggaattttcttgatcatcca
gaatatggatatggcatgtcaaactttataagagagaatattctggtggacagatgtatt
cttgatggtgaaatgttggtctgggataaatctgcaaatcgttttgcagagtttggttca
aatcaagaaatagccaaggctgccaaggatgggcttgatagcgatcgacagttgtgctat
gttgcgtttgacatcctttatgctggagataccagtgttattcaccagagcttgaaggag
aggcatcaacttcttcagcaatttgtcaaacctatagcaggttgtttggaaattttggtt
cctaatggtggccttaatacacatcgtcctgctggggaaccatgttggtctctaattgtt
catgatgttgatggcattgagaggtttttcaaagaaaccattgataacagagatgaagga
atcgttctgaaagatctcggctctaaatgggaacctagtgatcgtagtgcaaagtggatg
aagttgaagcctgattacatccgagcaggctctgatttagacgctcttataataggaggt
tactacggttctggacgtcacggaggcgaggtagcacaatttcttgtgggccttgcagag
cgtccaagcccaaatgcatatccaaaacgatttctttcattttgccgagtgggtacagga
ctttctgacgaagagctcaatactgttgtcaccaaattgaagccctatttcagcaaatat
gaatatccaaagaaactgcctccaaacttttatcaagttacaaataattcaaaagagagg
ccagatgtttgggttgagagcccagaaaaatcaattatagtttccataaccagtgatatt
cgaacagtcaggtcagaggtatttgctgctccatatagcttgagatttccgcggattgat
cgagttagatatgacaagccttggcatgagtgccttgatgtccagtcttttgttgaatta
gtccattcaagcaatggtactatgcaaagggcaatggacgacgcagttatcccagaaaat
aacccaagacgtaaaaagttatctagaggaacaaagaaatatgtctctgttgttccttcc
catttcattcaaactgatgtttctggggttaagggcgaaacatcgatattttcaaacatg
atattctactttgttaacgtgcctatattgcattctcttgattccttgcacaaattggtg
gttgagaatggcggcactttttcaatgaatttgaacagtacggttactcactgtatagca
tctgaaagtaaaggaatcaaatttcaagctgcaaagcgccagggagatgttattcattac
tcttggctccttgaatgttgtacacagaagcagtctctccctttacacccaaagtatttt
ctttttctatccgaggaaacaaagaaaaagctggaagaagaagttgatgagttctccgat
tcctactttttggatttgaatgtgacagaactggaacagatattaaacaacatcaataag
attgaagactccaaagcgatagagtactgcaagaaattctgtcccagggaggagtgggtt
cgctttcatggttggcgtgtttacttccacctaccaaggcaatctttaaaatatagaaac
tgggaagttccatttgaactagctattagaaggatgaaggttgcaatctgcactggaggt
ggcagtattgcagacactctttctcatgctactcatttggtgattgtctgtagtccagaa
cttggtttcgacttagatacacttttgaatagtttttctgaagcacagaggcttcttttg
caccgtagaagtttgcaaattgtaaagtcccagtggttagatgattgttttgagagaaac
cagaagttgcctgaggacatatataatttgaagcccttgcagtttcaacaagtatcaagt
ggggagagtgatgaacacaaacttgttggagaagaaaatgatagcttgtccagagatgct
tcatcttcttttggaggggtgagagaagagaatgctgcaccacacaagccaagagtagtc
agcttgccggataggggcacgaaaaggagaagaggcggacccaccgggacgagtaccgga
aaacgcaaaccacttgccaatctgccccagaaaacaagaccacgggctggaaaaaagcct
gctaagatcagtgaatatgaatccgataatgatgcttcttctggtgacatggcacacttt
gaagtcagcagcgcagattgtgggagttccgcgaaggttgacagtagaaagagagcagct
ctaaaccaacctagaagagcaagggcagcccggcttagaaacaagcccgtcgagatcaac
gacaacgaatcagatgaaggcgcagcagcagcagtagatgagaaaactacggttggaaat
ttcaagcccaatccaacaacaaatgagaggctccgcgacacttcaagccaacagcccgtt
cccgatttgcatcagaccgaggcagtgaaaggtcctaaatcagatactggcaaagcagtc
gaacaagagattgcagaacagagcgactacaaggcaagatttgacaagtctggtgtcggg
cagagcagcagcaagaacccaagtgaagaatatgttgatccggttcaatcaatgctactg
agcatgttaccggggcttgcaacgaacaaggtggagagtgtgggaccggttcgcgaagag
gctggaacaagagttccagatccagtcaatgaagaatataaagtgggaatggatgcagaa
aataaagcagttaagaaacggaaagtaagctacaaagatatggcaagtgaacttctcaag
gattga
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integrated database retrieval system
