Salvia splendens (scarlet sage): 121805759
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Entry
121805759 CDS
T07627
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
121805759
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sspl03021
]
121805759
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121805759
Transcription machinery [BR:
sspl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
121805759
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
121805759
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
121805759
NCBI-ProteinID:
XP_042061678
LinkDB
All DBs
Position
5:37594279..37602399
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AA seq
940 aa
AA seq
DB search
MDRSSRFQNPIPLSSVGFSKPPPIQSDGAGMKPLPPLLLDRFMAMFKDREEELRVFGGAA
VLPLETDEIVQLYEIILSELTVNSKPMITDLTVLAEEQRAHGEAIAGAICSRIIEVSVDY
KLPSLYLLDSIVKNIGKEYINFFSARLPEVFCEAYTQVHPNMHKAMRHLFGTWSTVFPLS
VLQKIGTKLKFSPPVNGHSSGLSSSRASESPRPTHGIHINPKYLEAQRQFGQSSVDPFRT
EGVCSTGRTGLTASGVDAVKVSLPSASRITRSSPPCGLGPAGSLSPAGPSIKDFGMDSST
KRLTVRQSPSHPGSDYGPSKVVSREEETSEWRKRNLQGNPKPQLKAVAAAAAYKYSGGID
LRGPRALISAYGMDEREKHLNNKHHKVKELDSNGAEQKIGIRTWQNTEEEEFDWEDMTPS
LADRMQSSDTYSSLPSLGNLTGRESVVADHAACLSAPGSVNNVAGASNFTSHIPPNFGRE
SLIFLPQQSQGQFNAKGSGSLAESRNVLTGGEQKSQVGNFSNIDWKSGRPAGVVSTFGST
YDSLAPEIRSGDAALRNTWNPANFLNSQIMPSHSSLPQQMLFRGQFGMKNASNIADQMHS
DPGSCRSMPLVALPQNSSIRPGMVPVNLHGATQPNFSMARESRQNLQLLYSVPGSSNTMV
PPLNYRYLAQGQGPAGTTPHMSFQVPGATLQPPPRGPHPGTTQAFPIGQNNGQVAPNGSV
RNGLSGLISSLMVQGLISLPEQDSVGVEFDQDSLKVRHENAITSLYADLPRQCKTCGHRF
KDQEEHSNHMDWHVNKNRTLKNRKTKPSPKWFVNINMWLSGTEALGIESAPGFLPIENTV
EKEEDEEMAVPADDSQKACALCGEPFDDFYSDEMEEWMYRGAVYMYAPGGLTVGMDTSQL
GPIVHAKCRPDSHGVSPENYEDETESTKEDGKRKKLRSHS
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggaccggagttcgagatttcagaaccctatacctctgagcagcgtgggtttcagcaag
cctccgccaatccagagcgacggtgcaggtatgaagccacttccgcctttgcttctcgat
agatttatggccatgttcaaggatcgcgaggaagaacttagggtttttggtggtgcagct
gttttgccgttggaaaccgacgaaattgttcagctttatgagattattttgtcggagctc
actgtcaattcgaagccaatgattactgatctcactgtacttgccgaagagcagcgggca
cacggcgaggccattgctggtgccatttgctcccggattattgaggtttctgttgattat
aaactgccttctttataccttttggatagcatcgtgaagaatataggcaaggaatacatt
aatttcttctctgctcgcttgcctgaggttttctgtgaggcttacacacaagtccacccc
aatatgcacaaagcaatgcgccatctgtttgggacatggtctacagttttcccactgtca
gtgcttcaaaagattgggacaaagttaaagttttctcctcctgtaaatggtcattcttca
ggattaagctcttcaagagcttctgaatctcctcgaccaacacatgggatacacataaac
cccaagtatttggaagcacaacggcagtttggacaatcatcagtagatccttttagaact
gaaggagtgtgttcaactggtcgtacaggccttacagcttctggtgtagatgctgtaaaa
gtgtctcttccatcagcttctaggataacaaggtcctcccctccttgtggacttgggcct
gcgggatcattgtctcctgctggtccttcaatcaaggattttggcatggatagttccaca
aagagactcactgttaggcagtcaccatctcatcctggaagtgattatgggccaagcaaa
gtggtgagcagagaggaggagacaagtgagtggcggaaaagaaatctgcagggcaatccc
aaaccacagcttaaagcagtagcagcagcagctgcgtataaatatagtggtggtattgat
cttcgaggaccgagagcattgattagtgcctatgggatggatgaacgagaaaaacattta
aacaataaacatcataaagttaaggagttggactcaaatggtgctgagcaaaagataggt
atcaggacatggcaaaacactgaagaggaagaatttgattgggaagacatgaccccatct
ttagcagatcggatgcagtctagtgatacatattcatctcttccatctcttggtaacttg
accggtagagagagtgttgttgcagaccatgccgcatgtttgtctgctcctggatctgtt
aacaatgttgctggtgccagtaattttacgagccatattcctcctaattttggccgagaa
tccttgatttttctcccacagcagtctcagggccaatttaatgccaaaggaagtggttct
ctagctgaaagtagaaacgttttaactggtggtgagcaaaagagccaagttggaaatttc
tcaaatattgattggaagtctggtcggcctgctggtgttgtttcaacatttggttccacc
tacgactcactggctcctgagattcgatcaggtgatgctgctttaagaaatacatggaat
cctgcaaattttctaaactcacagattatgccatcgcactctagtcttcctcaacaaatg
ctatttagaggtcagtttggtatgaagaatgcttctaatattgccgatcaaatgcattct
gatcccggtagctgtagaagcatgccactggtggccttgccccaaaattctagtattcgt
cctggaatggttcctgtaaatttgcatggtgcaacacagccaaacttttcaatggctcga
gagtccagacaaaatttgcaattgctttattcagtgcccggttcatcaaatacaatggta
ccacctttgaactatagatacttagctcaagggcagggtcctgctggcactactccacat
atgtcatttcaagtacccggggcaaccttacagcctccaccaaggggtcctcatccaggg
acaactcaagcatttcctattggtcaaaataatgggcaagttgctcctaatggctccgtg
aggaatgggctttcagggttaatatcttctttaatggtccaaggtttaatatctttacca
gagcaggattctgttggagtggaatttgatcaagacagtcttaaggtgagacatgaaaac
gcaattacgtctttatatgctgatcttccaaggcaatgcaaaacttgtggccatcgattt
aaagaccaagaagagcacagcaaccatatggattggcatgtaaacaagaaccgaactcta
aaaaaccgcaagacaaaaccttctccgaagtggtttgtaaacataaacatgtggctcagt
ggcacagaagccttgggaattgaatcagctccaggttttttgcccatcgaaaatactgtg
gaaaaggaggaggatgaagaaatggctgttcctgctgatgatagccagaaggcttgtgca
ctatgtggagagccctttgatgatttctatagtgacgaaatggaagaatggatgtatagg
ggagccgtatacatgtatgcaccaggtgggttaacagttggaatggacacatcgcagtta
ggtcctatagtgcatgccaaatgtagacctgactcacatggggtttcaccggaaaattat
gaggatgaaacggaatcaactaaagaagatggtaaaaggaaaaaactgcgaagtcattcc
tga
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