Salvia splendens (scarlet sage): 121805826
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Entry
121805826 CDS
T07627
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121805826
03015 mRNA surveillance pathway
121805826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121805826
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121805826
mRNA cycle factors
P-body specific factors
121805826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
121805826
NCBI-ProteinID:
XP_042061771
LinkDB
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Position
5:complement(38560721..38569185)
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AA seq
513 aa
AA seq
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MKGPLDRTKVVLRHLPPTISQSNLVDQIDSRFSGRYRWLAFRPGKSSTKHLKYARAYIDF
NESDDVIEFAEVFKGHVFVNEKGTQFRTIVEYAPSQRIPKQWSKKDGREGTILKDPEYLE
FLEFLAKPVENLPSAEIQLERKEAERAGAPKDAPIVTPLMDFVRQKRAAKGGGRRTVMNG
KPARRGGGMSSRNPVSGSSKRGSEKRASTTMQYVLRDSSKIMGNKDKSAYSLVRKLDDQQ
LNDKSISSASIAGNEALEGENGGTGSTGLGKKKILLLKGKEKEIPNVSGGPLLQQNTVSP
DKAAAPKHNQQREASGKIARSILLSRDTRQNQPSLGSQSELLIQSPNQERGKKPPRPPSL
QSLQKDTNGVPEDKLVSNDLHASPTEKQERRARNKDRPDRGVWTPLRRSDGLHSSDDSLS
LSASQISEAGGSAEESKQDILVTRGGGRGRRYSSDNGNTVGSYRHGVRRASAYNVKEADG
SSAVEGKSSKRGGSSGYASQEKQVWVQKSSSAT
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgaagggcccattggatcgaacgaaggtggtgctgcggcacttaccgccgacgatttct
cagtctaaccttgtcgaccaaattgattctcgcttctccggccgctaccgttggcttgct
ttccgccctggaaaatccagcacaaagcatctaaaatacgctagagcttacattgacttt
aacgagtcagatgatgtgattgagtttgccgaggtttttaagggccatgtctttgtcaat
gagaaaggtacacagtttagaacaattgttgagtatgctccttcacaacgcataccgaaa
cagtggtccaagaaggatggccgtgaagggactatattgaaagatcctgaatacttggag
ttccttgaatttcttgcaaagcctgttgagaatcttcccagtgcagagatacagttggag
aggaaggaagcagaacgagctggtgctccaaaggatgctcctatagtcaccccgttaatg
gactttgttcgtcagaaaagagctgcaaagggtggaggtcggaggactgtgatgaatgga
aagccagctagaagaggtggtggaatgtcatctaggaatccagtctctggttcttcgaaa
agaggctctgagaagagggcatctactactatgcagtatgtattaagggacagttccaag
attatgggcaacaaagataaatcagcttattcattggtccgtaaactagatgaccaacag
ttgaatgacaaatctatcagttcagcatctatagcaggaaatgaagcattagaaggggaa
aatggaggtacaggatccactggtctcgggaagaaaaaaatcctacttctaaaaggaaaa
gaaaaggaaattcctaatgtttctggcggtccgttactgcaacagaatacagtctctcct
gacaaagctgctgccccaaaacataatcagcagcgcgaagctagtggaaagatagccagg
agcattcttctcagcagggatactcgtcaaaatcaaccatctttgggatcacaatcagaa
ctgcttatccagtctcctaatcaggaaagaggcaagaaacctcctcgacccccaagtctg
caatcacttcagaaggatacaaatggggttcctgaggataagttagtctccaatgatttg
catgccagccccacagagaagcaggaaaggcgggcaaggaacaaggatagacctgatcgt
ggtgtttggactccacttcgacgttcggatggattacattctagcgatgactcattatcc
ttgtctgcttcacagatatctgaagcagggggttctgctgaagaatcaaaacaagatata
ctggtcacacgtggtggtggtcggggtaggcgttactcatctgacaatggaaatactgta
gggtcttataggcatggggttcgacgtgcctcagcttataatgtgaaggaagcagatggc
tcttctgctgtagaggggaaatcttcaaaaaggggaggttcttctggctatgcttctcaa
gagaaacaagtgtgggtccaaaagtccagttcagctacctag
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