Salvia splendens (scarlet sage): 121807789
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Entry
121807789 CDS
T07627
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl04120
Ubiquitin mediated proteolysis
sspl04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
121807789
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
121807789
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sspl04121
]
121807789
Enzymes [BR:
sspl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121807789
Ubiquitin system [BR:
sspl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121807789
Multi subunit Ring-finger type E3
Cul4 complex
Target recognizing subunit (DCAF)
121807789
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-RING_2
zf-C3HC4_4
zf-RING_UBOX
WD40_like
U-box
zf-RING_5
zf-Nse
zf-rbx1
Baculo_p24
DUF1664
Motif
Other DBs
NCBI-GeneID:
121807789
NCBI-ProteinID:
XP_042064039
LinkDB
All DBs
Position
6:7417383..7423619
Genome browser
AA seq
676 aa
AA seq
DB search
MGGITTSIGALVPSVKSELQEEASTAPPSTSTVPEEDRGVVDAEKDVLCPICMQIIKDAF
LTACGHSFCYMCIVTHLQNKNDCPCCSHFLTKTHLYPNFLLNKLLAKTSARQIAKTSTPL
EQLRQALEQGCEASVKELESLLHVIVEKKKKMEQEEAETNMQILLDFLVFLKKKKLDELN
EIQSDLQYIKQDIHAVEKRRIELCHRRDRYAPKMRMLSNDPHSKSLWPSLMDKHRDTTAV
SRATTASDQVRLSSSVSKSQKVDLRSSASPLTPWKDASGASDNQNLSPSGLALARKRRVH
AQFNELQDCYLQKRRYWSKLHSMQQERDSPGVTREGYTEGLEDFQSVLSTFTRYSRLQVV
AELRQGDLFHSANIVSSIEFDRDDELFATAGVSRRIKVFEFSSVVNELADVQCPVAEMMT
RSKLSCLSWNKYTKSHIASSDYEGIVTVWDVTTRQSVMEYEEHEKRAWSVDFSPTEPSML
VSGSDDCKVKVWCTKQEASALNIDMKANICSVKYNPGSSVHIAVGSADHNIYYYDLRNIS
QPLHTLGGHRKAVSYVKFLSNNELGSASTDNTLRLWDVKENVPLRIFRGHANEKNFVGLS
VNSEYLACGSETNEVYAYHKAISRPAAWHRFVNSGGDEAEEEPVSYFISAVCWKSDSPTM
LTANSQGTIKVLVLAP
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgggcggcatcaccacttcaatcggcgctctggtgccctcggtcaagtccgagctgcag
gaagaggcctcgacggctccgccgtctacttccacggtgccggaggaggatcggggggtg
gtcgatgcggagaaagatgttctctgcccgatatgcatgcaaatcatcaaggacgccttc
ctcacggcttgcggccacagtttttgctatatgtgcatcgtgacgcatctgcagaataag
aatgactgcccctgttgctctcacttcctcaccaagactcatctctatcctaattttctc
ctcaataagttacttgcaaagacttctgcacgtcaaatagctaaaacttccacgccactt
gaacaacttcgccaggctctggaacagggatgcgaagcatcagttaaggagcttgagagc
ctcctgcatgttattgttgagaagaaaaagaaaatggagcaagaagaagctgagacaaat
atgcagattttgcttgactttttggtttttttgaaaaagaaaaaacttgatgagctcaat
gagatacaatctgacctccagtacataaaacaagatattcacgctgtggagaagcgtcgg
atagagttgtgtcatagaagagatagatacgctccgaaaatgagaatgctatctaatgat
ccgcattcaaagtctctatggccttcattgatggacaaacatagagataccaccgctgtc
tctagggctaccactgcatcagaccaggtccgcttgagttctagtgtttccaaaagccag
aaagttgatttaagatcttctgcaagccctttaaccccatggaaggatgcttctggtgcg
tcagataaccaaaatctcagtccatctggactggctctggcaagaaagaggcgggttcat
gcacagtttaatgagctacaagattgttacttgcaaaaacgaagatactggtcaaaacta
cattcaatgcagcaagaacgagattcacctggtgtaaccagagaaggttacacagaagga
ctcgaggattttcagtctgttctgtcgaccttcacaagatacagtcggttgcaggttgtt
gctgaactaagacaaggcgatttgtttcactcagctaacattgtgtccagcatagaattt
gaccgagatgatgaattgtttgctactgctggagtatcacgacgtatcaaagtttttgaa
ttttcatcggtagttaacgaacttgctgatgttcaatgcccagttgcggaaatgatgacg
cgatcgaaactaagctgtttaagctggaacaagtacactaaaagtcacatagccagcagt
gactacgaaggcatagtaaccgtttgggatgtgaccactcgacagagtgtgatggaatat
gaggaacatgaaaaacgtgcttggagtgttgatttttcaccaacagaaccttcaatgcta
gtctcggggagtgatgattgcaaggtcaaagtttggtgtacaaagcaggaggcaagtgct
ctcaacattgatatgaaagctaacatatgctccgttaaatataaccctggatctagtgtt
cacatagcggttgggtctgcagatcacaatatttattactatgacttgagaaatataagc
cagccattacatacattaggtggtcacagaaaggctgtatcatatgtgaaatttttgtcc
aacaatgagcttggctcagcatctacagacaatacgttgcgcctgtgggatgtcaaagaa
aatgtacctctacgcatatttaggggtcatgcaaatgagaagaactttgtgggcctctcg
gttaacagtgagtacctagcctgtggcagcgaaactaatgaagtatatgcgtatcacaag
gctatatcgagaccagcagcgtggcatagatttgtcaactctggtggtgatgaagcggaa
gaagagcccgtgtcgtacttcattagtgctgtgtgttggaaaagtgatagcccaacaatg
ttaacagcaaacagtcaaggaacaattaaggttcttgttcttgctccctga
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