Salvia splendens (scarlet sage): 121808256
Help
Entry
121808256 CDS
T07627
Name
(RefSeq) THO complex subunit 1-like
KO
K12878
THO complex subunit 1
Organism
sspl
Salvia splendens (scarlet sage)
Pathway
sspl03013
Nucleocytoplasmic transport
sspl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sspl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121808256
09122 Translation
03013 Nucleocytoplasmic transport
121808256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sspl03019
]
121808256
03041 Spliceosome [BR:
sspl03041
]
121808256
Messenger RNA biogenesis [BR:
sspl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
121808256
Spliceosome [BR:
sspl03041
]
Complex C
Other components
EJC/TREX
121808256
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
121808256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Motif
Other DBs
NCBI-GeneID:
121808256
NCBI-ProteinID:
XP_042064587
LinkDB
All DBs
Position
6:complement(29603476..29612523)
Genome browser
AA seq
592 aa
AA seq
DB search
MDLFRKAILHPGPPQDFALQTMQQVIKPQKQVKLVQDENMLLENILRTLLQELVSDAVQS
GEAIMLFGQSIADEDARPGQIPRLLDIVLYLCEKEHIEGGMIFQLLEDLTEMSTMRNCED
IFGYIESKQDILGKPELFARGKLVMLRTCNQLLRRLSKANDVVFCGRIIMFLAHFFPLSE
RSAVNIKGVFNTSNETKYEKEAPESSSIDFNFYKTFWSLQESFSNPASLASTVTKWQKFA
SSLMVVLNTFEAQPLRDEEGSAINLEDEASNFSIKYLTSSNLMGLELKDPSFRRHILVQC
LILFDYLKAPGKTDKDLPSDTTKEEIKNCEERVKKLLEMTPPRGKEFLRSIEHILERERN
WVWWKRDGCSAFEKPPVEKKLAQDGGRKRRPRWRLGNKELSQLWKWADQNPNALTDPQRV
RTPAIMDYWKPLAEDMDESAGIEEEYHHKNSRVYCWKGLRFSARQDLEGFSRFTEHGIEG
VVPLELLPLEVRSKYQAKPGDRTKRAKKDETKGSTQQVEDTQIATPASETEMDGGRNDGE
GATGADGDGSSVSGEGDEHQKHNSDTDGGLEAGQIEGDTGMADADADLDVVA
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggatttattcagaaaggcaattctacatccagggccgcctcaagatttcgctctccag
actatgcagcaagttataaaaccccagaagcaagtgaaactcgttcaagatgaaaatatg
ctgttggagaatattctgcggactttgcttcaagaacttgtgtcagatgcagttcaatca
ggtgaggcaattatgctatttggtcaatccatagctgatgaggatgcacgtcctggtcaa
attcctcgtcttcttgacattgtattatacctctgtgagaaagaacatattgaaggtggc
atgattttccagcttttggaagatttgacagagatgtctacaatgaggaactgcgaagac
atttttgggtacattgaaagtaaacaagacattcttggcaagccagagctctttgccaga
gggaagcttgttatgctgagaacatgcaatcagctacttcgtcgtctatcaaaggcaaat
gatgttgtgttctgtggacgaattattatgtttcttgctcattttttcccattatcagaa
cgttcagctgtcaatatcaaaggagtttttaatacgtcaaatgagaccaaatatgaaaaa
gaagccccagaaagtagttctattgatttcaatttttacaaaaccttttggagtttacag
gaatccttctccaatcctgcttctcttgcttccactgttacaaagtggcaaaaatttgct
tctagtttgatggttgtgttgaatacatttgaggctcaacctctgagggatgaagagggc
agtgctattaaccttgaggatgaagcgtcaaacttcagtataaaatatctcaccagcagt
aatctaatgggtctggagttaaaagatccaagttttagaagacatatcctggttcagtgc
cttattttgtttgattacttaaaggcccctggaaaaaccgataaagatttgccatcagat
actacaaaagaggagataaaaaattgtgaagagcgggtgaagaagcttctagagatgacc
ccccctagagggaaagaattccttcggagcattgagcatattttggagcgtgagaggaat
tgggtttggtggaagcgcgatggttgctctgcatttgaaaaaccacctgtggagaaaaag
ctagctcaagatggaggtcggaagcgtcgtcctcggtggagattgggaaataaagaactg
tcgcagttgtggaaatgggctgatcagaacccgaatgctcttacagatcctcagcgtgtc
cgcactcctgccatcatggattactggaaaccattggctgaagatatggacgaatctgct
ggaatagaagaagaatatcatcacaaaaatagccgagtatattgctggaaaggtttaagg
ttttctgcccggcaagatttggaagggttttcaagattcactgaacatggcattgaaggg
gttgttcccttggaacttttgccgctcgaagtgcgatcaaaatatcaagctaaaccaggt
gatcgaaccaaacgtgccaagaaggatgagacaaaaggttccacgcagcaagtcgaagac
actcagattgcgactcctgctagtgagaccgagatggatgggggcagaaacgacggggag
ggtgctacaggtgcggatggtgatggtagtagcgtaagtggcgagggtgatgaacatcag
aaacacaactctgataccgacggtggtttggaagcaggccaaattgaaggagatacagga
atggctgatgcagatgctgatttggatgttgtagcctag
DBGET
integrated database retrieval system
