Streptomyces spongiicola: DDQ41_11525
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Entry
DDQ41_11525 CDS
T06937
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sspo
Streptomyces spongiicola
Pathway
sspo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sspo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DDQ41_11525 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sspo03400
]
DDQ41_11525 (mfd)
Enzymes [BR:
sspo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DDQ41_11525 (mfd)
DNA repair and recombination proteins [BR:
sspo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DDQ41_11525 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AWK09449
UniProt:
A0A2S1YZD0
LinkDB
All DBs
Position
complement(2660786..2664316)
Genome browser
AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVKDPALVEAVKAAGDGHRPHVDLVGPPAARPFVVAGLAREAHRPVLAVTA
TGREAEDLAAALRSLLDPDTVVDYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPSADDP
AAGPVRVVVAPVRSVLQPQVKGLGDLEPVALRTGRTADLEDVVAGLAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDEVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDEVRQRAAALAEEHPELGELLGRIAEGIAVEGMESLAPVLVDDMELLLDVMPAGSMAV
VCDPERVRTRAADLVATSQEFLHASWAASAGGGQAPIDLGAASLRGIADVRDRARELGMM
WWSVSPFAADEELTGDTLTLGMHAPEAYRGDTARALADTKGWLADGWRTVFVTEGHGTAS
RTVEVLGGEGIAARLDADLGEISPSVVHVACGSIDHGLVDRGLKLAVLTETDLSGQKAAG
RDGARMPTRRRKQVDPLTLEAGDYIVHEQHGVGRYLEMVQRTVQGATREYLLVEYAPAKR
GQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVVTRALSRFQSDAEAKA
TLEGLRDGSVDIVIGTHRLFSSETRFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMGESALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGGA
EEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIAAANSEEDVKAVREELVDRYGKLP
EPVENLLLVAGLRMLARACGVGEIVLQGPNIRFAPVELRESQELRLKRLYPRTVIKPAVQ
QVLVPRPTAGRIGGKPVVGRELLAWTGELLTSVLGS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggaccccgccctcgtcgaagcggtg
aaagccgcgggcgacggtcaccggccgcatgtcgatctggtcggaccgccggccgcccgg
cccttcgtcgtggcgggcctggcccgcgaggcccaccggcccgtgctggccgtgaccgcg
accggccgcgaggccgaggacctggccgccgcgctgcggtcgctgctcgacccggacacg
gtcgtcgactacccctcctgggagaccctgccgcacgagcggctgtccccccgctccgac
accgtcggccggcggctcgcggtgctgcgccggctcgcgcaccccagcgcggacgacccg
gccgccgggccggtccgggtcgtcgtcgcccccgtacgctcggtgctccagccccaggtc
aagggcctcggggacctggagccggtggccctgcgcaccgggcggaccgccgatctggag
gacgtcgtcgcagggctcgcggccgcggcctactcgcgggtggagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctcgacgtcttcccgccgaccgaggagcatccc
ctccgggtcgagttctggggcgacgaggtcgaggagatccgctacttcaaggtcgccgac
cagcgttcgctggaggtcgccgagcacgggctgtgggcgccgccgtgccgtgagctgctg
ctcaccgacgaggtgcgtcagcgggccgcggccctcgccgaggagcatcccgagctgggc
gaactgctggggaggatcgccgaggggatcgccgtcgagggcatggagtccctcgccccc
gtcctggtggacgacatggagctgctgctcgacgtcatgccggctggctcgatggccgtg
gtgtgcgaccccgagcgggtccgtacccgggccgccgacctggtggccacctcgcaggag
ttcctgcacgcgtcgtgggccgcttcggccggcggcgggcaggcgccgatcgacctcggc
gcggcctccctgcgggggatcgccgacgtgcgggaccgggcgcgcgagctgggcatgatg
tggtggtccgtgtcgccgttcgcggcggacgaggagctgaccggcgacaccctgacgctc
gggatgcacgccccggaggcgtaccggggggacaccgcccgtgctctcgccgacaccaag
gggtggctcgccgacggctggcgcacggtgttcgtgaccgagggccacggcacggcgtcc
cgcaccgtcgaggtgctcggcggcgagggcatcgcggcccgcctggacgcggacctcggc
gagatctccccgtccgtcgtccatgtcgcctgcggctcgatcgaccacgggctggtcgac
cggggtctgaagctcgcggtgctgacggagaccgacctgtccggtcagaaggccgcgggc
agggacggcgcgcggatgccgacgcgccgccgcaagcaggtcgacccgctcaccctggag
gcgggcgactacatcgtccacgagcagcacggcgtcggccgctatctggagatggtgcaa
cgcaccgtccagggcgccacccgcgagtacctgctcgtcgagtacgcccccgccaagcgc
ggccagcccggtgaccgcctctacatccccaccgaccagctggagcaggtcaccaagtac
gtcggcggcgaggcgcccacgctgcaccggctcggcggggcggactggacgaagacgaag
gcgcgcgcgaagaaggcggtcaaggagatcgccgccgacctgatcaagctctacagcgcc
cggatggcggcgcccggacacaccttcggcccggacacgccctggcagcgggagctggag
gacgccttcccctacgccgagacacccgaccagctgaccaccatcgccgaggtcaaggag
gacatggagaagtcggttccgatggaccggctgatctgcggtgacgtcggctacggcaag
acggagatcgcggtacgggccgccttcaaggccgtccaggacggcaagcaggtggcggtg
ctcgtcccgacgacgctgctggtgcagcagcacttcgggacgttctccgagcggtactcc
cagttcccggtcgtcacccgggccctgtcccgcttccagtccgacgccgaggcgaaggcg
accctggaggggctgcgggacggctccgtcgacatcgtcatcggcacgcaccggctgttc
tcgtccgagaccaggttcaaggacctgggcctggtcatcgtggacgaggagcagcggttc
ggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtgctgacgatg
tccgcgacgccgatcccccggacgctggagatggcggtcaccggcatccgcgagatgtcg
acgatcaccaccccgccggaggagcgccatccggtgctgaccttcgtcggcccctacgag
gagaagcagatcggtgcggccgtccgccgtgaactgctccgcgagggacaggtgttctac
atccacaaccgggtcgagtcgatcgaccgggcggcggcgcggctgcgggagatcgttccg
gaggcgcggatcgcgaccgctcacggccagatgggcgagagcgcgctggagcaggtcgtc
gtcgacttctgggagaagaagttcgacgtgctcgtctccacgacgatcgtcgagtccggc
atcgacatctccaacgccaacaccctcatcgtcgagcgcggcgacaacttcggcctgtcc
cagctgcaccagctgcgcggccgggtcggccgcggccgggagcgcggctacgcgtacttc
ctgtacccgccggagaagccgctgaccgagaccgcgcacgagcggctggcgacgatcgcc
cagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgcggc
gccggcaacctcctcggcggcgagcagtccggccatatcgcgggcgtcggcttcgacctg
tacgtccgcatggtgggcgaggcggtcgccgactaccgggcctcgctggagggcggcgcg
gaggaggagccgccgctggaggtcaagatcgaactgccggtcgacgcgcacgtcccgcac
gactacgcgccgggcgagcggctgcgcctccaggcgtaccgggccatcgccgccgcgaac
tcggaggaggacgtcaaggcggtgcgcgaggaactcgtcgaccgctacggcaagctgcca
gagccggtggagaacctgctcctggtcgccgggctgcggatgctcgcccgcgcctgcggg
gtcggcgagatcgtcctccagggcccgaacatccgcttcgcgccggtggagctgcgcgag
tcgcaggagctgcggctgaagcggctgtacccgcggacggtgatcaagccggcggtgcag
caggtactggtgccccggccgacggcggggaggatcggcggcaagccggtggtcgggcgt
gaactgctggcgtggacgggcgagttgctgacgtcggtcctcgggtcgtag
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