KEGG   Solanum stenotomum: 125844290
Entry
125844290         CDS       T08385                                 
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
sstn  Solanum stenotomum
Pathway
sstn03030  DNA replication
sstn03410  Base excision repair
sstn03420  Nucleotide excision repair
sstn03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sstn00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    125844290
   03410 Base excision repair
    125844290
   03420 Nucleotide excision repair
    125844290
   03430 Mismatch repair
    125844290
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sstn03032]
    125844290
   03400 DNA repair and recombination proteins [BR:sstn03400]
    125844290
Enzymes [BR:sstn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     125844290
    6.5.1.6  DNA ligase (ATP or NAD+)
     125844290
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     125844290
DNA replication proteins [BR:sstn03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    125844290
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     125844290
DNA repair and recombination proteins [BR:sstn03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     125844290
   NER (nucleotide excision repair)
    Other NER factors
     125844290
   MMR (mismatch excision repair)
    Other MMR factors
     125844290
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 125844290
NCBI-ProteinID: XP_049379527
LinkDB
Position
11:7302339..7336737
AA seq 802 aa
MLCLSSYRFTQTTLLYNFSLKPSSSIFLHFSKKKQFPLNPLFFSVNPNSRTMSDSPPTPP
PPRSAFAVLMANSKKKTTSSPKKRKTPDVETSSKSPVVNQDSVLKPIKDTHLVNESKSEE
VVVKKRNQDSILKPIEDTHLVNESKSEECVVKKRKMISPDESIVEIKKKAANFDPKKAVY
WGNGQRVPFMFVVKAFDAISKESGRIVITEIVTNMLRTVIETTPEDLLPVVYLAANKIAA
AHDGMELGIGDASIIKALAEACGAKEAHIKKQYKELGDLGLVAKASRSSQPLMHKPEALT
VAKVFDTFRIIAKESGKDSQEKKKNYIKSLLVAATDCEPQYLIRLLQTKLRIGLAEQTLL
VAIAHAFVYSDKHSSPPAGVDSPLEEAAKIVKQVFSVIPVYEKIVPALLADGVWKLSETC
GFSPGVPVGPMLAKPTKGVSEILDKFQDMEFTCEYKYDGERAQIHYMEDGSVEIYSRNAE
RNTGKFPDVVTAISRLKKSSATSFVLDCELVAYDREKQKILPFQVLTTRARKNVVISEIK
VNVCIYAFDILYLNGQPLLQEQLNVRREHLYKSFEEEPGYFQFATAVASNDLEEITKFLE
DAVNGSCEGLIIKTLTKDATYEPSKRSNNWLKLKKDYVESIGDSLDLVPIGAFHGRGKRT
GVYGAFLLACYDSNNEEFQSICKIGTGFSEVELEERSSSLRSKVIPKPKSYYRYAETINP
DVWFEPTEVWEVKAADLTISPVHRAAQGIVDPEKGISLRFPRLSRVREDKKPEEASSADM
VADMYNAQKHNQKSNQDDNDED
NT seq 2409 nt   +upstreamnt  +downstreamnt
atgttgtgtttaagttcatatcgtttcactcaaaccactcttctatacaatttctccctt
aaaccttcttcttcaatctttcttcacttctccaagaagaaacagttccctctcaacccc
cttttcttctctgtaaaccctaattcaagaaccatgtctgattctcctcctactcctcct
cctcctcgctctgcgtttgctgtccttatggcaaattccaagaagaaaacaacctcttca
cccaagaaacgtaaaaccccagatgttgaaacttcaagtaaaagccctgttgttaatcaa
gattcagttttgaagccaattaaggacacccatttggtcaatgagtcgaaaagtgaggag
gtggtggtgaagaaacggaatcaagattcaattttgaagccaattgaggacacccatttg
gttaatgagtcgaaaagtgaggagtgtgtggtgaagaaacggaaaatgattagtccagat
gagagcattgtggaaataaagaaaaaagctgcgaattttgatccaaaaaaggctgtatat
tgggggaatggtcagagagtgccgttcatgtttgtagttaaggcgtttgatgcaatttcg
aaggagtcagggcggattgtgattactgaaattgtgactaatatgttgaggactgttatt
gagacgacgcctgaggatttgttgcctgttgtataccttgctgctaacaagattgcagct
gcacacgatgggatggagcttggtattggtgatgcttccattatcaaggcacttgctgaa
gcctgtggtgctaaagaagcacatatcaagaagcaatacaaggagcttggagatttgggc
cttgttgcaaaagcaagtcgttcatcacagcctctgatgcataaaccagaagcactgact
gttgccaaagtttttgacacatttcggatcattgccaaggaatctggaaaggatagtcag
gaaaagaaaaagaattacattaaatcactgcttgttgcagccactgattgtgaaccccaa
tatttgattcgtctcctccagacaaagctacgcattggtttggctgaacaaacactgtta
gtcgcaatcgctcatgcttttgtgtactcagataagcattcatcacctcctgcaggtgta
gattctcctttggaagaggccgccaagattgtaaagcaagtgttctctgtgattccagtt
tatgaaaaaattgtccctgctcttctagctgatggtgtttggaagctttcagaaacatgc
ggtttctcacctggtgttccggttggacctatgctagctaagccaaccaaaggagtatct
gaaattcttgataagtttcaagatatggagttcacatgtgaatacaagtatgatggtgaa
cgtgctcagatacactacatggaagatggttccgttgagatatatagccgaaatgcagaa
agaaatactggaaagtttcctgacgttgttactgctatctcaagattgaagaaatcttct
gcaacttcatttgttcttgactgtgaactggttgcatacgaccgtgagaaacagaagatc
ctgccctttcaggtccttactacacgtgctcgtaaaaatgttgtcattagtgaaatcaag
gtcaatgtgtgcatatatgcttttgatatcttgtatcttaatggacaaccacttcttcaa
gagcaacttaatgttcgcagagagcatctttacaagtcatttgaagaagaacctggatat
ttccagtttgctacagctgtagcctcaaacgatcttgaggaaataacaaaatttcttgaa
gatgcggtcaacggcagttgtgagggattgattatcaaaacactaactaaagatgctaca
tatgagccttcaaaacggtcaaataactggctaaaactgaagaaggattacgtggagagt
attggcgactcactggatctggtaccaattggtgcttttcatggtcgggggaaacgtact
ggtgtttacggagcctttctcctagcttgttatgatagcaacaacgaggagtttcagagc
atctgtaaaatcggaactggattttctgaagtagagcttgaggaacgctcttccagcctt
cgttctaaagttattcctaaaccaaagtcatattacaggtatgctgaaaccatcaatcca
gatgtatggtttgaacctactgaggtctgggaagtgaaagctgctgatcttactatcagc
cctgtccaccgtgctgcccaaggtatcgtggatcccgagaagggaatttcattacgattt
ccacgtctgagccgtgtacgagaagacaagaagcctgaggaggcctcatcagcagatatg
gtagcggatatgtataacgctcagaaacacaatcaaaaaagcaatcaggatgacaatgat
gaagactaa

DBGET integrated database retrieval system