Solanum stenotomum: 125844734
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Entry
125844734 CDS
T08385
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03013
Nucleocytoplasmic transport
sstn03015
mRNA surveillance pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125844734
09122 Translation
03013 Nucleocytoplasmic transport
125844734
03015 mRNA surveillance pathway
125844734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125844734
03041 Spliceosome [BR:
sstn03041
]
125844734
03009 Ribosome biogenesis [BR:
sstn03009
]
125844734
03012 Translation factors [BR:
sstn03012
]
125844734
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125844734
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125844734
mRNA cycle factors
Stress granule specific factors
125844734
Spliceosome [BR:
sstn03041
]
Complex C
Other components
EJC/TREX
125844734
Ribosome biogenesis [BR:
sstn03009
]
Eukaryotic type
90S particles
Helicases
125844734
Translation factors [BR:
sstn03012
]
Eukaryotic type
Initiation factors
eIF-4
125844734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
125844734
NCBI-ProteinID:
XP_049380022
LinkDB
All DBs
Position
11:23352061..23358059
Genome browser
AA seq
409 aa
AA seq
DB search
MEAVASGSVVPANRRRPPMEEDRLVFETSKGVEPITSFAEMGIKDDLLRGIYQYGFEKPS
AIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQVVDTKNSEVQALILSPTRELAAQT
EKVILAIGDYINIQAHACIGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRTLRTRAIK
LLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITSKFMTDPVRILVK
RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTNKMRENNF
TVSSMHGDMPQKERDAIMAEFRGGTTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYI
HRIGRSGRFGRKGVAINFVKTDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggtggcgtcagggtcggttgttccggcgaacaggaggaggccgccgatggag
gaagacaggttagttttcgagacatccaaaggtgttgaaccaataacgagtttcgctgag
atggggattaaagatgaccttcttagagggatttaccaatacggcttcgaaaaaccatct
gccatccaacaacgggctgtcttgcccattatatccggccgtgatgtcattgctcaggca
caatccggtaccggaaaaacctccatgattgcccttaccgtttgccaagttgtcgatacc
aaaaattccgaggtacaagcattgatattgtctcctacacgggagcttgcagctcagacg
gaaaaggtgattttggctattggagattacattaacatacaggcacatgcatgtattgga
ggcaaaagtgtgggtgaagatatcagaaagctagagcatggagtacaagtagtctctgga
actcctggaagagtctgtgacatgattaaaaggagaactttacgaactagggccataaaa
ttattggttcttgatgaatctgatgagatgttgagccgtggttttaaagatcagatatat
gatgtttacagatatcttccaccagagcttcaggttgtactgatttctgccactcttcca
aatgaaattctggagataacaagcaaatttatgacagatcctgttcggattcttgtaaaa
cgtgatgaattgactctagagggcatcaaacagttctttgtagcggtggagagagaagag
tggaaatttgatacactgtgtgatctttatgatacactcaccatcacccaggctgttatt
ttctgcaacacaaaacgaaaggttgattggctaactaacaagatgcgtgagaataatttt
acagtctcatctatgcacggagacatgccacagaaggagagagatgctattatggctgag
ttccgaggtggcacaactcgtgttctaatcacaacagatgtttgggcgaggggacttgat
gttcaacaggtgtctctggtgattaattatgaccttccaaacaacagagagctttacatt
catcgcattggtcggtctggtcgttttggtcgaaagggtgttgctataaattttgtgaag
actgatgatattaaaattttgagagacatagagcaatactacagtacccagatagatgaa
atgcccatgaacgtggctgatttgatataa
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