Solanum stenotomum: 125851115
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Entry
125851115 CDS
T08385
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
sstn
Solanum stenotomum
Pathway
sstn03022
Basal transcription factors
sstn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125851115
09124 Replication and repair
03420 Nucleotide excision repair
125851115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125851115
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125851115
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
125851115
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
125851115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
IBR
DUF3173
VWA
Motif
Other DBs
NCBI-GeneID:
125851115
NCBI-ProteinID:
XP_049386862
LinkDB
All DBs
Position
Unknown
AA seq
414 aa
AA seq
DB search
MNKEEKRFNQEEEDEEENGRGREAWERTYADERSWESLQEDESGLLRPIDNTTLSHAQYR
RRLRTATAARIQKGLIRYLYIIIDFSRAAAEMDYKPSRMVVVARQVEAFIREFFDQNPLS
QIGLVILKDGVAHCLTDLGGSPEAHIKALMGKLGTSGDASLQNGLDLVCDLLNQIPSYGH
REALILYSALSTCDPGDILETIQKCKASKIRCSVIGLSAELYICKHLCQETGGMYFVALD
EPHLKELVLEHAPPPPAIAEFAVANLIKMGFPQRTAEGVISICSCHKEAKVGGGYTCPRC
KARICELPTECCICGLTLVSSPHLARSYHHLFPIRPFDDVSPSALKDFHKLPKNCFGCQL
SLLNPGNLPGPQVACPNCKQHFCLDCDIYIHESLHNCPGCESLRNSKTISDMEE
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaagaagaaaaacgatttaatcaagaagaggaggatgaggaggaaaatgggaga
ggtcgagaagcatgggaaagaacttatgcagatgaaagatcatgggagtctttgcaagag
gatgaatcaggtctccttcgtccaattgacaacacaactctatcccatgctcagtatcga
cgacgtctccgcactgcaaccgctgcacgaattcagaagggtctgattcggtacctctac
attatcattgatttctccagggcagctgcagaaatggattataaaccaagccgaatggtt
gtagttgctagacaagtggaggcttttataagagaattttttgaccagaatcccctgagt
caaattggcttggtgatcttgaaagatggagtagctcattgcttaacagatcttggtggc
agtcctgaggctcatatcaaagcattgatgggtaaattggggacctcgggtgatgcatcc
cttcagaatggcctagatcttgtgtgtgatctcctaaatcaaatcccatcgtatggtcat
cgtgaagcccttatcttgtattcagctcttagcacatgtgatccaggggatatactggaa
accatccaaaaatgcaaagcgtccaagataaggtgctcagtaattggtctctctgcagaa
ctctacatatgcaagcatctctgccaagagactggtggaatgtattttgttgcattggat
gagcctcatttaaaagagttggtattggagcatgccccacctcctccagctattgcagag
tttgctgttgcaaatttgatcaagatggggttcccccaaagaacagcagagggtgtcatt
tcaatttgttcatgtcataaagaggctaaagttggcggtggatacacttgtccaagatgc
aaagcacgaatatgtgagcttcctaccgagtgttgcatctgcggactgacccttgtatct
tctccacatttggcaaggtcatatcaccatctcttcccaataaggccatttgatgacgtg
tcaccctcagctctgaaagattttcacaagttaccaaagaattgctttggttgccaactg
agtcttctaaatcctggaaatttgccaggtccgcaggttgcttgtccaaactgcaaacaa
cacttctgccttgattgtgatatttatatacatgagagcttgcacaattgtccaggttgt
gagagcttaaggaattccaagaccattagtgatatggaagaatga
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