Solanum stenotomum: 125854256
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Entry
125854256 CDS
T08385
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
sstn
Solanum stenotomum
Pathway
sstn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125854256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125854256
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
125854256
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_16
TPR_17
TPR_14
TPR_8
TPR_19
TPR_12
TPR_7
TPR_9
TPR_6
TPR_10
TPR_15
Y2_Tnp
Motif
Other DBs
NCBI-GeneID:
125854256
NCBI-ProteinID:
XP_049389706
LinkDB
All DBs
Position
2:complement(121388..136308)
Genome browser
AA seq
1179 aa
AA seq
DB search
MSVEDDAAIRRLEEAIVSQPGDPSLHFDLGVLLWDRGGELPDIQEKAAQHFLIAAKLNPQ
NAAAFTYLGHYYARVAVDSQRAIKCYQRALGLNPDDSIAGEAICDILDATGKETLEIAVC
REASHKSPRAFWALCRLGYLLVNQNKWSEAVQSLQQAIRGYPTCADLWEALGLSYQQMGM
FTAAVKSYGRAIELEESRVFALVESGNVYLMLGSFRKGIEQFRQALQISPLNLSAHHGLA
SALLSLAKESIDSGAFKWGASLLEEASKVALASTSIVGNISCAWKLLGDIQLTYAKCFPW
MDEGLGSGADENSFSSSILSWKRICCLAVRSACRSYQRALHLSPWQANVYTDVAIASELL
FSLKENCKDDMNPWFVSEKMCLGGLLLEGCNSEFWVALGCLSDHSALKQHAFIRALQLDV
SLAVAWAYLGKLYRQEGESQLAQLAFDRARSIDPSLSLPWSGMSADAAARNLKPDEAYEC
CLRAVQIFPLAEFQTGLVKLALQSGYLRSPEAFGAIQQALQRAPQYPESHNLKGLVCEAR
SDYESAVASYRLARLAARVFAGKLSKSSLADISINLTRSLCMAGNADDAIEECKYLESKG
LLDVEGLQLYALSYWKLGKYDLALSMAKRLASSALPTEHPLAAASVSFICRLVYHISGKE
LAMRYILQLPKRAFQSSRVRLVVSAIHALDESHQLDSVVSSVRESLSSSKEIAALDFMAT
LGLLVKHGSKDCLEVQQGVNYLRRALHISPNSHLIRTLLGYLLVASKEWKDAHISARCFR
VDPSEHQKKEGVKSSVEVFGAGAVACCIVGSGEKTLAMSICRENSTLECKTIKMLQKCVH
QEPWDRHSYYLLVLNYLQKAREKKFPRNLCVVLERLINVALRSELYAKDEISSQYQKFQL
LLCAAEVSLHCGNNFKCIMHAKSALEMQLPDNYLFFAHLLLCRAYAVEDNYSGLHEEYIR
CLELKTDNHIGWICLKFLESRYKLQSDSSSLALAFQECGKEIKTSWNMWIAMYNLVQGLT
AVWNGEFIDAEESLAQACLLAGGESCLFLSHGVICMEIARQQSDSDFLSLAIRSLKKAKD
SSSTPLPFVSLLLAQAEASLGSESKWEKNLNEEWSSWPPEIRPAELFFQMHLLARRLTEG
SGAISNLEPSTSPLRWLLQAIHINPSCLRYWRALLKFME
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtagaagacgatgctgctataagacggttagaagaagcgattgtctctcagccc
ggcgacccttctctccactttgatctcggagtcttattatgggacaggggaggagaattg
ccagatattcaggagaaagccgcacaacattttctcatagcagccaagctcaacccacaa
aacgctgctgctttcacatatttgggacattactatgctcgagtagctgtcgactctcag
agggctatcaagtgttatcagagagcccttggccttaatccagatgattcaattgctggg
gaagcaatttgtgatatactggacgcaactggaaaagagaccttggagatagctgtatgc
cgtgaagcttcacacaagtcgcccagggccttttgggctttatgcagattgggttacctt
ctggtcaaccaaaacaagtggtccgaagcagtgcagagtcttcagcaggccatcagaggc
tatcccacatgtgctgatttgtgggaggccctgggtctatcctaccagcaaatgggcatg
tttacagccgctgttaagtcctatggaagagctattgaattggaggaatcacgagtattt
gcactggtagaaagtggaaatgtctatttgatgcttggttcgtttcgaaagggaatagag
cagtttcgacaagctttacaaatctcacctctgaatttgtccgcacatcatgggcttgcc
tctgcactccttagtttggcaaaggaatctattgattctggtgcctttaaatggggagct
tcactcttagaggaagcttcaaaggtggctctagcaagtacttccattgttggcaatata
tcttgtgcttggaagcttcttggtgatattcagctcacatacgcaaaatgttttccatgg
atggatgaaggattgggctcaggagctgacgaaaattcattcagtagttcgatcctgtca
tggaagagaatctgctgtttagcagtcagatctgcttgtcgctcctaccagcgggcattg
catttgtccccttggcaagctaatgtgtatactgatgttgccattgcatctgagcttctt
ttctcgttaaaggagaactgtaaagatgacatgaacccttggtttgtgtctgaaaagatg
tgccttggaggcttattgcttgaaggttgcaatagcgagttttgggtagccttagggtgt
ttatctgatcattctgcattaaagcaacatgctttcatacgagcactgcagttggatgtt
tctcttgctgttgcgtgggcatatcttggaaagctttataggcaggagggggaaagtcaa
ttggctcagctagcatttgatcgtgcaagaagtattgatccttcactttcattgccatgg
tcaggcatgtcggctgatgctgctgcaaggaatctgaaaccagacgaggcatatgagtgc
tgtctgcgggcggttcagatctttccacttgcagaattccaaacaggtctagttaagctt
gctctgcagtctggttatctgcgatctccagaggcatttggagccatccagcaggctttg
cagcgcgcacctcagtatcctgaatctcacaatctgaaagggctagtttgtgaggcacgg
agtgattatgaaagtgctgttgcttcatatagactggcacgccttgctgccagagttttt
gcaggaaagctttcaaaatcatctcttgcagatatatcaattaatttgaccaggtcactt
tgtatggcaggaaatgctgatgatgctattgaagaatgtaaatatttggaaagcaaaggt
cttctggatgtagaaggtttgcagctttatgcgctttcttattggaaacttggaaaatat
gaccttgctctttcgatggcaaagagactggcctcatctgctttaccaacagagcaccca
ttggctgctgcctccgtcagtttcatctgtagattagtatatcatatttcagggaaggaa
ttagctatgagatacatattacaactgccaaaaagagccttccagagttcaagagttagg
cttgtagtatctgctattcatgcattagatgaaagtcatcagcttgactcagttgtttca
agtgttcgtgagtctctttcatctagcaaagagattgctgcgctggatttcatggccaca
ctgggcttactagtcaaacatggatctaaggactgcctagaagttcagcagggggtcaat
tatctaagaagagctcttcatatttctccaaacagtcatttgataaggacccttcttggc
tatctgttagtagccagcaaagaatggaaagatgctcacatttcagctcgatgcttcaga
gtggatccttctgaacatcagaaaaaggaaggtgttaaatccagtgttgaggtttttggt
gctggagcagttgcttgctgtattgtggggagcggcgagaagacactagcaatgtccatc
tgtagagaaaattcaacactggagtgcaaaacaatcaagatgctgcagaagtgtgtccat
caggagccttgggaccgtcattcatattacctccttgtactaaattatcttcagaaggcg
cgggagaagaaatttcctcgtaacctgtgtgttgttcttgagaggttgataaatgtggct
cttcgaagtgagctttatgcaaaagatgagatttcttcccagtaccaaaagttccagctt
ctgctttgtgccgcagaggttagtttgcattgtgggaataatttcaagtgcattatgcat
gcaaaaagtgctctagagatgcagcttccagataactacctcttctttgcacacttgcta
ctgtgtcgtgcctatgctgtcgaagataattattcagggcttcatgaagagtacataagg
tgcttggagctcaaaactgataatcatattggttggatttgtcttaagtttcttgaaagt
cgatacaagctgcagtcagattccagttcactagccttggcctttcaagagtgtggcaaa
gaaataaaaacttcgtggaacatgtggattgctatgtataatttggttcaaggtctaact
gcagtttggaatggggaatttattgatgcagaagagtcccttgcgcaagcttgcttgttg
gctggtggcgagagttgcctttttcttagccatggtgttatttgcatggagattgccagg
cagcagtccgattcagattttttatcgcttgctattagaagtctgaagaaagcaaaagac
agttcttcaacgccgctaccctttgtctcactgctattggcacaagcagaagctagcctc
ggctctgaatcaaagtgggaaaagaacctcaatgaggaatggtcatcttggccaccagag
attaggcctgctgaactgtttttccagatgcatttgcttgctagacggctgacagaaggt
tccggagctatatccaatctagagccatctacaagtcctctaagatggttacttcaagct
atccatatcaatccatcttgtttgagatattggagagctttgctgaaatttatggagtaa
DBGET
integrated database retrieval system
