Solanum stenotomum: 125865668
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Entry
125865668 CDS
T08385
Name
(RefSeq) uncharacterized protein LOC125865668
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sstn
Solanum stenotomum
Pathway
sstn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
125865668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sstn03021
]
125865668
03019 Messenger RNA biogenesis [BR:
sstn03019
]
125865668
Transcription machinery [BR:
sstn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
125865668
Messenger RNA biogenesis [BR:
sstn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
125865668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
Collagen_bind_2
zf-C2H2
Motif
Other DBs
NCBI-GeneID:
125865668
NCBI-ProteinID:
XP_049401831
LinkDB
All DBs
Position
5:complement(62320024..62330688)
Genome browser
AA seq
1066 aa
AA seq
DB search
MKSSRRSCLESGTKKPRLNEDSIGINRISNEGSFIPQRAVNSGSVAPRFRAIDSWEDPEN
SDSLCEPYQPQQPQQHQQQQQLISEYKRALAELTINSKPIITNLTIIAGENMRDAKAIAA
IICANILEIPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVEPSVHSGMQ
RLFVTWRKVFPPQQLQLIEKELGFTTGVNGSSSGARRDDSKAQQTAHSIHVNPKYLEARQ
CLQQSTRAKGSADDITPRDIQKPERATSVGSERSWFDISAKCVQKEQLNERIREKTTSAA
YGDPEYVSDLSRSSGFGLRITGEKLKEEGRDKSWYNPANGKILSQRNGLDLKHGVQSPSQ
NTANSDAYPQSTHSFANQSGTLMDRSWQSSDEEEYMWDDVNCADKDQRASEDPYKTGLDN
QHPRPQNIFRLKAESEALADSLSREDNGQASSKNQISSMWSDEARHLASVQSTPDHPRGH
LTSFSGLPTATNSIVGKSFQSQKDSSHVGTPSYGIAKTANGSRGTIMQPRETRGAAPPSL
ESAMRQLPPSPSISTGNFSQVVNSLTRDYHTQTESHADPRMSQFSRRSNLDPRKQVPQDS
LPMTSQSAHLVSSQISQTPRYNPSSMMSSFQEEHHVSFPEKIQQESPESEFSIPSQKSIV
TQLSGFADHSGTVPSILQGSESSGQTSMSSLLAAVMKSGVLNSSSSVGTPLNSCDKGPLS
SQAGAQPPIPSGSPIQLLSSGPKAPHSVVSVQSDRNVSNPPSYSQRNGERPRLPPDPAPT
PVGSESLQAPNVVNAASNPVAKLLNSLMAKGLISASKEESPTSTPPPTPPQTRFQCPPAS
ISSTPGVSAPISSSTCSSQKDELSLSKPAAKIPDALPQSNKEEREDAFKPGVIRESNPGV
ISELLDDVPHQCGICGLRLKLRVQLDRHLEWHALRNPDGKLLHSERRWYLNSGEWFAGTG
SVPHCGILAVPTGGSSKLSECTEVMVPADESQCVCVLCGQVFEDFYDEKSDKWMFKGAVY
MDDSLNESGIQNPIVHKNCTSEDSQNWMLKDDIKQESEDWFTEFMD
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgaagagttctcgtagatcatgtctggaatcaggtacaaaaaagcccagattaaacgaa
gattctattggaatcaatcgcatttcaaatgaagggagttttatccctcaacgggctgtg
aattcaggctctgttgccccgagatttagggcaattgacagttgggaagatcccgagaac
agtgattcactctgtgaaccttaccagccgcaacagccgcagcaacatcagcagcaacaa
cagcttatcagcgaatataagagagccttagcagagcttaccattaattccaagccgata
atcacgaatttgactataattgctggtgaaaatatgcgcgatgcgaaggccattgctgct
attatctgcgcgaacattctcgagattcctagtgagcaaaagctgccatctctctatctt
ttggacagtattgtgaagaatatcgggagggattatatcaagtattttgctgccaggctg
cctgaggttttctgcaaggcttatagacaggtagaaccttcggtacactctgggatgcag
cgtctttttgtaacctggagaaaagtattccctcctcagcaacttcaacttattgagaag
gagcttggatttacaactggtgtcaatggctcttcatcaggagcacgtagagatgattcg
aaggctcaacagactgcacatagcattcatgtaaatcccaagtatttagaggcaaggcag
tgcctacagcaatcaaccagagcaaaaggatcagctgatgacatcactccacgggacata
cagaaaccagagagagcaaccagtgtaggttctgaaagatcttggttcgatatatctgct
aagtgtgttcagaaagagcagttgaatgagcgaatccgcgagaaaactacaagtgcagca
tatggagatcctgaatatgtttctgatttgtcaaggagttctggatttggattaagaata
acaggtgaaaagctaaaggaagagggacgtgataaatcttggtacaatcctgcaaatggt
aagatattaagtcaaagaaatggcttggaccttaagcatggagtccaaagtccatcccag
aatacggcaaattctgatgcatatccacaatcgacacactccttcgccaatcaaagtggt
actttgatggatcggagttggcagagttctgatgaagaggagtatatgtgggatgatgtc
aattgtgcagataaagatcaacgggcatccgaagatccatataaaactggcttagataat
caacatccgagaccccaaaacatatttaggttaaaggctgaaagtgaagccttggctgac
tctctttccagagaagacaatggccaagcatcttccaagaatcaaatatcatcgatgtgg
tcagatgaagctaggcatttggcttctgttcaaagtactccagatcatccaagaggtcat
ctaacctctttcagtgggttgccaacagctacaaactccatagttgggaaatctttccag
tcacagaaagattcaagtcatgtggggacaccaagttatggaatagcaaagactgcaaat
ggatccaggggaactataatgcaaccacgagaaactcgaggagctgcccctccatcttta
gagtcagcgatgcgtcagcttcctccgtctccatcaatctcgaccggcaattttagtcaa
gtagttaacagtctcactagagattatcatacacagactgaatctcatgcagacccaaga
atgtctcaattttcaaggaggtcaaatttagatccccgtaagcaagtcccccaggactct
ctgccaatgacatctcagagtgctcatttggttagttcacagatatcacagactccaaga
tataatccatcttccatgatgtcatcttttcaagaagaacatcacgtctcttttcctgaa
aaaatccaacaagaaagtcctgaatctgaattttccattcccagccaaaagtcaatagtc
actcagctttctggttttgctgatcattctggcaccgtgccttccattcttcaaggctct
gaatcctcaggtcaaacgagtatgagtagtctgttggctgctgttatgaagagtggagta
cttaatagtagctctagtgtcggcacaccactgaattcttgtgataaggggcctctgtca
tcccaagccggtgcacagcctcctatacccagtggttctcctatccaacttttgtcatct
ggaccaaaggctccacattctgttgtgagcgtacaatcggacagaaatgtttcaaatccc
ccaagttattcccagagaaatggagaacgaccacgactgccacctgaccctgctccaact
ccggtaggtagtgaatcattgcaggctccaaatgtggtaaatgctgcttctaatcctgtt
gcaaaacttttgaattcattgatggcaaagggattgatatctgcgtcaaaggaggagtct
ccaacttcaactcctccaccgacacctccacaaactcggttccagtgtcctcctgcaagc
atcagttcaactcctggtgtatctgctccaatttcctcatccacttgctcgtctcaaaag
gatgagctgtctctctctaaacctgctgctaaaatccctgatgcattacctcagtccaac
aaagaagagagagaagatgcatttaaaccaggtgtaattcgggagtccaatcctggtgtc
atcagtgaacttcttgatgacgttccacatcaatgtggcatatgtggtcttcgacttaag
ctccgagtgcaacttgatagacacttggaatggcatgcattaaggaatccagatgggaaa
ctgttgcatagtgaaaggaggtggtatttaaattcgggggaatggtttgctggaaccggt
agcgtcccacactgtggtatattggcagtaccaactggaggttctagcaaactatcagaa
tgcactgaggttatggttcctgctgatgaaagtcagtgtgtatgtgtcttgtgtggtcag
gtttttgaagatttttatgatgaaaagagtgacaagtggatgttcaaaggagctgtttac
atggatgattcattgaacgaaagcggtattcagaatcctatagtccacaagaactgtaca
tcagaagattctcaaaattggatgcttaaggatgatataaaacaggagtcggaagactgg
tttactgagttcatggattaa
DBGET
integrated database retrieval system
