Solanum stenotomum: 125871201
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Entry
125871201 CDS
T08385
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125871201
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sstn03041
]
125871201
Enzymes [BR:
sstn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125871201
Spliceosome [BR:
sstn03041
]
Complex C
Other components
Step II factors
125871201
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
GAP1-M
NACHT
T2SSE
Motif
Other DBs
NCBI-GeneID:
125871201
NCBI-ProteinID:
XP_049407759
LinkDB
All DBs
Position
7:52563971..52579876
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AA seq
669 aa
AA seq
DB search
MPSMAANNFSRNTHQNQTKGDFVSRKQMIEQQRKNLPIAAVERRLVEEVRNNDTLIIVGE
TGSGKTTQLPQYLFKWGFCRDGGVIGITQPRRVAAITVAKRVAEECGIPLGQKVGYAIRF
EDVTSGQTKIKYMTDGLLLREALLDPYLSKYSVIIVDEAHERTIHTDVLLGLLKNVQKTR
SKSINGVVNTDHNNSNNGHALEERIDNQNDGILKSCQVKKYNPLKLIIMSASLDARVFSE
YFGGAKAVHVQGRQFPVDIFYTHKPETDCIDAALITIFQIHLEEGPGDVLVFLTGQEEIE
SVERLIHERLRQLPECSRKLLTFPIFSSLPSEKQMRVFMPSPAGHRKVILATNIAETSVT
IPGIRYVVDPGLVKARTYDPKMGVDSLIIVTTSKAQALQRSGRAGRDGPGKCYRLYQESF
FEKLTDSTLPEIKRCDLSNVVLQLKALGIDDVINFDFIEKPDRSGESVTKHAFKEFEEAS
DRHQRFKFLHDCLYLSQSRNALKSFASPEGDHLTLLNVYRAADEFFQKNKMVHSEEKAEK
NLRKWCKDNYINSRSLKHARDIHSQIVRNVEQMGLRVTSCEDDTLLLRRCLAASFFLKAA
MKQPDGAYRVTLSGLIVQIHPSSVLFRAKPECIVFNELVHTNHSYVRNVSRIDYLWLVEL
APHLYAVQD
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgccttcaatggctgctaacaatttttcaagaaacactcatcaaaatcaaacaaaaggg
gactttgtttccaggaagcaaatgattgagcagcagagaaaaaatttaccaattgctgca
gttgaaaggagactagtggaggaggtgcgaaacaatgacacactgataattgttggagaa
actggaagtggaaagacaactcaactacctcagtatctttttaaatggggattttgccgt
gatggtggtgtcattgggataactcaacctagacgtgtggctgctatcactgttgctaaa
cgtgttgctgaggagtgtggcattccattgggtcaaaaggttggatacgctattagattt
gaagatgtaacttctggccaaacaaagatcaaatatatgacagatggtttgcttctgagg
gaagcattattggatccatacctctccaagtattctgttattattgttgatgaggcgcac
gagcggactatccacactgatgtattgcttggattgttaaagaatgtacagaaaacaagg
tcaaaatctatcaacggagtggtaaatactgatcataataattctaataacgggcatgcc
ctggaggaaaggattgacaatcagaatgacggtattttgaagtcatgtcaagtgaaaaag
tacaacccattgaaattgatcatcatgtcagccagtctggatgcacgagttttctcagag
tactttggtggtgcaaaggctgttcatgttcagggacggcagtttcctgtcgatatattc
tacacccataagcctgagacagattgcatagatgctgctttgattactatatttcagata
catctagaggagggacctggtgatgtgcttgtattccttactggtcaagaggagattgaa
tccgttgaaaggcttatccatgaacgtctccgacaattacccgaatgcagtagaaagctc
ttaacttttcccatattctcatcacttccctctgagaagcaaatgagggttttcatgcct
tcaccagctggacatcgtaaggtgatactagcaacaaatattgctgagacatcggtgaca
atacctggaatcaggtacgttgtggatcctggactggtgaaagcccgaacatatgatcct
aagatgggagttgattcattgatcattgtcacaacatctaaagctcaagctctgcagagg
agtggacgtgcagggcgtgatggacctgggaaatgctatcgtttgtatcaagaaagtttc
tttgagaaacttacagattctacattacccgagattaagagatgtgacctctcgaatgtt
gtattgcagctcaaggctctaggcattgatgatgtcatcaactttgacttcattgaaaaa
ccagacagatctggggaatctgtaacgaagcatgcttttaaggaatttgaagaggcaagt
gatagacatcaacgttttaaattcctccatgactgcctgtacttgtcccaatcacgaaat
gcattgaaaagctttgcaagtccagagggggatcatctgacattgcttaatgtataccgc
gctgctgatgagttctttcaaaagaacaagatggtacacagtgaagaaaaagctgaaaag
aatcttagaaaatggtgcaaggataattatattaacagtcgctctctaaaacatgctcgt
gatatccacagtcaaattgtgaggaatgttgaacaaatgggtcttcgcgtcacttcttgt
gaagatgatacgcttctcctccgcagatgccttgctgcctcgttttttcttaaagcagct
atgaagcagcctgatggtgcatacagggtgacgttaagtggtttgattgtgcaaatacac
ccgtcttctgtcctgttccgagccaagccagagtgtatagttttcaatgaactggttcat
actaaccatagttatgtccgtaatgtctctagaatcgattacttgtggctcgttgagctg
gcacctcacttgtatgccgtgcaagactaa
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