Solanum stenotomum: 125877803
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Entry
125877803 CDS
T08385
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sstn
Solanum stenotomum
Pathway
sstn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sstn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
125877803
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sstn03400
]
125877803
Enzymes [BR:
sstn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
125877803
DNA repair and recombination proteins [BR:
sstn03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
125877803
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
BRCT
DNA_ligase_IV
CofC
Motif
Other DBs
NCBI-GeneID:
125877803
NCBI-ProteinID:
XP_049415031
LinkDB
All DBs
Position
9:complement(41782798..41822825)
Genome browser
AA seq
1170 aa
AA seq
DB search
MATSALDGGGVGGEDIKFSVMVSLFQWIQKSKSSAKKRSKFRKFIDTFCRKPQDNFAAMR
LILPGLDRERGSYGLKEHVLATCLIDALAMSRESDDARRLLNWRKGGPKTGSNAGNFSLV
AAEVLQRRQGMASAGLTIKELNDFLDHLASSENRAEKTSILSDLIRKTNAQEMKWIIMII
LKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRSQRHKRQDIEVGKPVRPQL
ALRVSNASAAWKKLYGKEVVVECKFDGDRIQIHKNNSELNFFSRNFLDHQEYAHGMSDVI
TQNILADKCILDGEMLVWDASINRFAEFGSNQEIAKAAREGLDSDRQLCYVAFDILYVGD
TSVIHRSLKERQEILQKVVKPIKGRLEILVPNGGLNAHRLSGEPCWSIIARSVDDVDKFF
KGTVENRDEGVVLKDLTSKWEPSDRSGKWLKLKPDYVRPGSDLDVLIIGGYYGSGRHGGE
VAQFLVGLAEPPAPNTYPRRFISFCRVGTGVSDEERNTIVTRLKPYFRKYEYPKQAPPTF
YQVTNNAKERPDVWVESPEKSIIVSITSDIRTIRTEVFAAPYSLRFPRIDKVRYDKPWHE
CLDVQSFVDLVHSTNGTTQREDNYGVEQDDESKSIRSSRKREKKNVSAVPSHFVLTDVSR
IKGETSMFYDMVFYFANVPSSHTLQSLHKMVVEHGGAFSMNLNKSVTHCIAAESRGIKFQ
AAKLHGDVIQCSWLVDCCLQKKLLPLQPKYFVFLSDSTKKKMEAEVDEYSDSFYSDISIE
EIKLLLRNIEHSEDSKTVEYYKKKYCPKDEWARFHGCCIYFFIPKQCLEYSDSKVLVELA
MRRMKVEISVGGGKVGDNLFHATHVVVMSLPEIDVKFNEVLNSFSEAEKHVLYNTKLHVV
GARWLEDSFKEDQKLLEESYSLKPSNFQMSISEKSRHDKLKGDSEKCKRPSSPDKHGGQI
KAEGISDQGRAITLPKRGRKRDRGRPTGSATAKGKVGINVPRRVKRKVTSSRAKIHGNES
DESATSGEHLRNDESEAAVGSHETIAVRSSGIQNEDDVQDLEMSPDDRKTLPPGTAECSV
IGERLDEAHETSYGSGNIVRGKDKVDELEDPVDPVQAMLLHMIPHLDSKPTRSVDPLVKD
DKPEADTNPSPKKKKKVSYKDVAGELLKDW
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttccgccttagacggtggtggtgttggtggagaagacataaaatttagtgta
atggtcagccttttccagtggatacagaagagtaaatcatcagcgaagaagcggtccaag
ttccgaaagtttattgacaccttctgcaggaagcctcaggataatttcgctgccatgcgc
cttattctccctggcctcgaccgtgagcgtggctcttatggccttaaggagcacgtcctc
gctacttgcctcattgacgcacttgccatgtcccgcgaatccgatgatgcccgccgtctt
ctcaactggcggaaaggcggtcccaaaactggctcaaatgccggcaacttctctcttgtt
gccgcggaggtcctccagcgcagacagggaatggcttctgctgggctaacaattaaggaa
ctaaatgacttccttgatcacttggcctcaagtgaaaatagagcagagaagacttcaatt
ctgtctgatctaatcaggaaaacaaatgctcaagaaatgaaatggattataatgataatt
ctcaaagatcttaagttgggaattagtgagaagagcatcttccatgaattccatccagat
gcagaggacttattcaatgtcacatgcgatttaaaattagtttgtgaaaagttgagggac
agaagtcaacggcataaacgccaggatattgaagttggaaaacctgtccgccctcagctg
gctcttagggtcagcaatgcatctgctgcatggaaaaagctttacgggaaagaagtagtt
gttgagtgcaaatttgatggggatcgcatccagattcacaaaaataattctgagctaaac
ttcttttcaagaaactttctggatcatcaagagtatgctcatgggatgtcagatgttatt
actcagaatatccttgctgacaagtgcatactcgatggtgaaatgttggtttgggatgca
tcaataaaccgctttgcagagtttggttccaatcaagaaatagctaaggcagcaagagag
ggtcttgatagtgataggcagttatgttatgttgcgttcgatattctttatgttggggat
accagtgttattcatcggagcttgaaggaacgccaagagattctccagaaagttgtgaag
cccataaaaggccgtttagaaattttggtccctaatggcggtcttaatgctcatcgtctt
tctggggagccatgttggtcgatcattgctcgtagtgttgacgatgtcgataaattcttt
aaaggaactgttgagaacagagatgaaggagtagttttgaaagatttaacttcaaaatgg
gaaccaagtgatcggagtggaaaatggctaaagttgaagcctgattatgttcgacctggc
tctgatttggatgttcttattatcggaggctactatggttctgggcgacatggaggagag
gtagctcaatttctggtgggtcttgctgagcctccggctccaaatacatatcccagaagg
ttcatttctttttgcagagtgggcactggagtttctgatgaggaacgcaataccatagta
actcgattaaaaccttatttcaggaagtatgagtacccgaagcaggcaccaccaaccttt
tatcaagtaacaaataatgcaaaagagcgacccgacgtgtgggttgaaagtccagagaaa
tccatcattgtttcaattacaagtgatattagaacaataagaactgaggtgtttgctgct
ccatacagcttgagatttccgcgtattgataaagtcagatatgacaagccttggcatgag
tgtcttgatgtgcaatcatttgttgatctggtacattcaaccaatggtaccacacagagg
gaggacaattatggggttgagcaggatgatgaatcaaagagcattaggtcgtcaagaaaa
cgagagaagaagaatgtctctgcagttccttctcattttgttctgactgacgtgtctcga
atcaagggtgaaacatcaatgttctatgacatggtgttttattttgctaatgtgccttca
tcacatacacttcaatccttgcacaaaatggtggtcgagcatgggggtgctttctccatg
aatttgaataagtcagttactcattgtatagcagctgaaagtagaggtatcaagtttcaa
gctgcaaaacttcatggagatgttattcaatgctcttggctcgttgactgctgtctgcaa
aagaagctccttcctttacagccaaagtattttgttttcctttctgattcaacaaagaaa
aagatggaagcagaagtggatgaatattctgattctttctactccgacatcagcattgaa
gaaattaaactgcttttgagaaatatagaacactcagaagactccaaaactgtcgagtac
tacaagaaaaagtactgtcccaaggatgaatgggctcgatttcatggttgctgcatttat
tttttcattccaaagcagtgtctggaatattcagattccaaggttttagtggaacttgct
atgagaaggatgaaagttgaaatttctgtgggtggtgggaaagttggtgacaatcttttt
catgctacccatgtcgtcgtcatgtctctaccagagattgatgtaaagttcaatgaagtg
ttaaatagtttctcagaggcagagaaacatgttttgtacaatacaaagctgcatgtagtt
ggagcacggtggttggaggattcctttaaagaggaccagaagttgcttgaggagagttat
agccttaagcctagcaattttcaaatgtcaatctctgagaagagtagacatgataagcta
aaaggtgattccgaaaagtgcaaaagaccatcttcccctgataaacatggaggacaaatc
aaagcagaaggaatttcagaccagggccgagctatcacgctaccaaagaggggcaggaaa
cgagatagaggaagacctactggtagtgctacagcaaaagggaaagtggggatcaacgtt
ccacgtagagttaaacgcaaggtcacaagtagtcgtgctaagattcatggaaatgaatct
gatgaaagtgctacttcaggcgagcatcttcgtaatgatgagagtgaagcggctgttggg
agccatgaaactattgcagtacgtagctcaggaattcagaatgaggatgatgtacaagat
ctggaaatgtcacctgatgatcgtaaaacacttccaccagggactgctgaatgcagtgtg
atcggtgaaagattggacgaagctcacgaaacttcatacggaagtggaaatattgtcagg
ggcaaagacaaggtggatgagctggaagaccctgttgatccagtccaagctatgctactg
catatgataccccacttggatagtaagccaacaagaagcgtggaccctcttgtaaaagac
gacaagccagaggcagatactaatcccagtcctaaaaagaaaaagaaagttagctataaa
gatgtagctggtgagttgctcaaagattggtga
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