KEGG   Sphingomonas suaedae: FPZ54_17255
Entry
FPZ54_17255       CDS       T07976                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ssua  Sphingomonas suaedae
Pathway
ssua03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ssua00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FPZ54_17255 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ssua03400]
    FPZ54_17255 (ligD)
Enzymes [BR:ssua01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FPZ54_17255 (ligD)
DNA repair and recombination proteins [BR:ssua03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FPZ54_17255 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase RBM39linker
Other DBs
NCBI-ProteinID: QDX27580
UniProt: A0A518RJH5
LinkDB
Position
3642217..3644661
AA seq 814 aa
MAKTDPLARYNAMRDFAKTAEPRGEIAKGQGRRFIVQKHDATRLHWDFRLEIDGVLKSWA
VTRGPSLDPGEKRLAVRTEDHPMSYASFEGTIPKGEYGGGTVMLWDRGEWAPVPGKSAKD
LEKGHLHFVLEGERMKGEWLLIRLKPRGKEKRENWLLRKIDDAYAGATDVLVETGLTSVT
TGRTMQEIAEGVKPAAGRAKATAKSKPKRTAQAPAPAFRDPQLATLVDSVPAGNGWLHEM
KYDGYRALVAIGKGGPRVYTRSGLDWTDKFAGIAEAAASLPASSALIDGEVVAFRDGTPD
FSTLQDALSTGTGDLAFFAFDLLQQDGEDLADLPQIDRKERLRALLDGADPRLLFSEHVL
GAGEKLFEAMCREGHEGVISKRADAPYRGKRTRSWLKIKCTRRQEFVVIGWLPSSAKGRG
LRSLLLGVNADGALRYAGKVGTGFNASNSDDLMAKLARIERKTPPADVPKVAARGAHWVT
PKLVAEVAFAEFTAENVVRHASFIALREDKPAEDIVTERAASPPPAPQSDVKISSRDRVI
FPDAKITKGELADYYAVVAPIMLPWVADRPVSLVRCPQGRAKQCFFQKHDAGSFGDRVHH
VDIREKDGSVEPYLYIDDADGLLSCVQMGTIEFHGWGSRVADVEKPDRLVFDLDPDEGLD
FATVKKAAEDLKQHLADMGLTSFPMLTGGKGVHVVVPLTPQAEWPAVKSFADRFARALAQ
AEPERFTANLKKAERKNRIFIDYLRNQRGSTAVMPYSARARPGAPVAVPLSWSELRDTDS
AQLFSVRDATELLERAGGRALTGWGRADQVLPDL
NT seq 2445 nt   +upstreamnt  +downstreamnt
atggcgaagactgacccgctcgccagatataatgcgatgcgcgatttcgcgaagaccgcc
gaaccgcgcggcgagatcgcgaaggggcaggggcggcggttcatcgtccagaagcatgac
gccacccggctgcactgggatttccggcttgagatcgatggcgtgctgaaaagctgggcg
gtgacgcgcggccccagcctcgatcctggcgaaaagcggctcgcggtgcggaccgaggat
catccgatgtcctatgccagtttcgaggggacgatcccaaagggcgaatatggcggcggc
acggtgatgctgtgggatcggggcgaatgggcgcccgtgccgggcaagagcgcgaaggat
ctcgagaaaggccatctccacttcgtccttgagggcgaacggatgaagggcgaatggctg
ctcatccgcctcaagccgcgcggcaaggagaagcgcgaaaactggctgctgcgcaagatc
gacgacgcttatgccggtgccaccgacgtgctggtcgagacggggctgacgagcgtcacc
accgggcggacgatgcaggagatcgccgagggcgtgaaacccgcggcggggcgtgcaaag
gcaacggcaaagtccaaacccaaacgaaccgcacaggctcccgctccggcttttcgcgac
ccccagctcgcaaccctggtcgacagcgttcccgccgggaatggctggctgcacgagatg
aaatatgacggctatcgcgccctcgtcgcgatcgggaagggggggccgcgcgtctatacc
cgcagcggcctcgactggaccgacaagttcgccggcatcgccgaggctgccgcgagcctt
cccgcatcgtccgcgctgatcgatggcgaagtggtcgccttcagggacggcacgcccgat
ttttcgacgcttcaggatgccttgtccacgggcaccggcgatctcgccttcttcgccttc
gacttgctccaacaggatggcgaggacttggccgatctcccccagatcgaccgcaaggaa
cggctccgtgctctgctcgacggcgccgatccgcgcctgctcttctccgaacatgtcctg
ggcgccggggagaagctgttcgaagcgatgtgccgcgaggggcacgaaggcgtcatctcg
aagcgcgccgatgccccgtatcgcggcaagcggaccaggagctggctcaagatcaaatgc
acgcggcggcaggaattcgtcgtcatcggctggctgccgagcagtgcgaaggggcgcgga
ttgcgttcattgctgctgggcgtcaacgcggatggcgcgctgcgctatgcgggcaaggtg
ggtacgggattcaacgcatcgaattccgatgacctgatggccaaactcgcccggatcgag
cgcaagaccccgcccgccgatgtgccgaaggtcgcggcacgcggggcgcattgggtcacg
ccgaagctggtcgcggaggtcgcctttgccgagttcaccgccgaaaacgtcgtccgccat
gcgagcttcatcgcgctgcgcgaggacaagcccgccgaggacatcgtgaccgaacgcgcc
gcatcgccaccgcctgcgccgcagagcgacgtcaagatcagcagccgcgaccgcgtgatc
tttcccgacgccaagatcaccaagggcgaactcgccgattactatgccgtagtcgcgccg
atcatgctcccctgggtcgccgaccgcccggtcagcctggtccgctgcccgcagggtcgc
gcgaagcaatgcttcttccagaagcatgacgcgggcagcttcggcgatcgcgtccatcat
gtcgacattcgggagaaggacgggtcggtcgaaccctatctctatatcgacgatgccgat
ggcctgctctcctgcgttcagatggggacgatcgagttccatggctggggcagccgcgtc
gcggatgtcgaaaagcccgaccggctggtgttcgacctcgaccccgatgaggggcttgat
ttcgcgacggtcaaaaaggcggcggaggacctcaaacagcatctcgccgatatgggcctg
accagctttccgatgctgaccggcggcaagggcgtccatgtcgtcgtgccgctgacaccg
caggcggaatggcccgcggtcaaatccttcgccgatcgcttcgcccgcgcgctcgcccag
gccgaacccgagcggttcaccgccaacctcaaaaaggccgagcgcaagaaccgcatcttc
atcgattaccttcgcaaccagcgcggcagcaccgccgtcatgccctattccgcccgcgcc
cgccccggcgccccggtcgcggtaccgctcagctggagcgaattgcgcgataccgacagc
gcgcaattgttcagcgttcgcgacgcgaccgaattgctggaacgtgcggggggccgtgcc
cttacgggctggggccgcgccgatcaggtgcttcccgacctgtga

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