Streptomyces subrutilus: CP968_20005
Help
Entry
CP968_20005 CDS
T07087
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ssub
Streptomyces subrutilus
Pathway
ssub03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssub00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CP968_20005 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssub03400
]
CP968_20005 (mfd)
Enzymes [BR:
ssub01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CP968_20005 (mfd)
DNA repair and recombination proteins [BR:
ssub03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CP968_20005 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
AAA_22
MFD_D3
RecG_dom3_C
4HBT_3
Motif
Other DBs
NCBI-ProteinID:
QEU80282
UniProt:
A0A5P2ULZ9
LinkDB
All DBs
Position
4531637..4535170
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVTRDPALAEAVTAAGDGNRMHVDLVGPPAARPFVIAALARQTGRTVLAVTA
TGREAEDLAAALRSLLPPDEVVDYPSWETLPHERLSPRSDTVGRRIAVLRRLAHPSKDDP
AAGPVSVVVAPIRSVLQPQVKGLGDLVPVSLRQGQSVDLGEVTQALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDEVEEVRYFKVADQRSLEIAEHGLWAPPCRELL
LTDQVRERAAALAEAHPELGELLNKIAEGIAVEGMESLAPVLVDDMELLIDVLPGRSMAL
VCDPERVRTRAADLVATSQEFLMASWAATAGGGEAPIDVGAASLRGIAEVRDRARELDMM
WWSVSPFAADEEAPGGDTLKLGMRAPEAYRGDTARALADTKAWIADGWHTVYLTEGHGPA
ARTVEVLGGEGIAARLEADLRALEPSIVHVSCGSIDNGFVDPALKLAVLTETDLTGQRTA
SKDLGRMPTRRRKTIDPLTLEAGDYIVHEQHGVGRYVEMVQRTVQGATREYLLVEYAPAK
RGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYS
ARMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVNVRALSRFQTETESK
ATLEGLREGSVDLVIGTHRLFSQETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRRELLREGQCF
YIHNRVESIDRAAAKLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVGEAVADYRSAVEGG
IEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIASANSEADVKAVREELTDRYGKL
PEPVENLLLVAGLRMLARACGVGDITLQGPNIRFGPVELRESQELRLKRLYPGAVLKPAA
SQVLIPRPKTARVGGKPLVGRELLAWTGEFLTTILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggactgctcgacgccgtcacccgggacccggccctcgccgaggcggtc
accgcggccggggacggcaaccgcatgcacgtggacctggtcggcccgccggccgcgcgg
ccgttcgtgatcgccgcactggcccggcagaccgggcgcaccgtcctcgcggtcaccgcc
accggccgcgaggccgaggacctcgccgccgcgctgcgctccctgctgccgcccgacgag
gtcgtcgactacccgtcctgggagaccctgccgcacgagcgcctcagcccgcgcagcgac
accgtgggccggcggatcgccgtcctgcgccgcctggcccaccccagcaaggacgacccg
gccgccggccccgtcagcgtcgtggtcgcgcccatccggtccgtgctccagccgcaggtc
aaggggctcggggacctggttccggtgagtctgcgccaagggcagagcgtcgacctcggg
gaggtgacgcaggccctggccgcagccgcgtacgcccgcgtcgagctcgtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctcgacgtgttcccgcccaccgaggaacacccg
ctgcgcatcgagttctggggcgacgaggtcgaggaggtccgctacttcaaggtcgccgac
cagcggtccctggagatcgccgaacacggcctgtgggcaccgccctgccgggagctgctg
ctcaccgaccaggtgcgggagcgggccgcggccctcgccgaggcccaccccgagctcggc
gaactgctgaacaagatcgccgaggggatcgcggtcgagggcatggagtccctggccccg
gtcctcgtcgacgacatggagctgctgatcgacgtcctgccgggccgttcgatggccctc
gtctgcgaccccgagcgggtacggacccgggccgccgacctggtggcgacctcgcaggag
ttcctgatggcctcctgggcggccaccgcgggcggcggcgaggcgcccatcgacgtcggc
gcggcctcgctgcgcggcatcgccgaggtccgcgaccgggcccgcgagctggacatgatg
tggtggtcggtctccccgttcgccgccgacgaggaggcccccgggggcgacacgctcaag
ctcggcatgcgcgcccccgaggcctaccgcggcgacaccgcccgcgcgctcgccgacacc
aaggcctggatcgccgacggctggcacaccgtctacctcaccgagggccacggcccggcc
gcccgcaccgtcgaggtgctcggcggcgagggcatcgcggcccggctggaggcggacctg
cgggccctggagccctcgatcgtgcacgtctcctgcggctcgatcgacaacggcttcgtc
gaccccgccctcaagctggccgtcctcaccgagaccgacctcaccggacagcgcaccgcc
agcaaggacctcgggcggatgccgacccggcgccgcaagacgatcgacccgctgaccctg
gaggccggcgactacatcgtccacgagcagcacggcgtcggccgctacgtcgagatggtg
cagcgcaccgtccagggcgccacccgcgagtacctcctcgtcgagtacgcccccgccaag
cgcggccagcccggcgaccggctctacatccccaccgaccagctggagcaggtcaccaag
tacgtcggcggcgaggccccgaccctgcaccggctcggcggcgccgactggaccaagacg
aaggcgcgcgccaagaaggcggtcaaggagatcgccgccgacctcatcaagctgtacagc
gcccgcatggcggcccccgggcacaccttcggcccggacacgccctggcagcgcgagctg
gaggacgccttcccgtacgcggagacgcccgaccagctcacgaccatcgccgaggtcaag
gaggacatggagaagtccgtcccgatggaccggctgatctgcggcgacgtgggctacggc
aagaccgagatcgcggtgcgggcggcgttcaaggcggtccaggacggcaagcaggtcgcc
gtcctcgtcccgaccacgctcctcgtgcagcagcacttcggcaccttctccgagcgctac
agccagttccccgtcaacgtgcgggcgctgtcccgcttccagacggagaccgagtccaag
gccaccctggagggcctgcgcgagggctccgtcgacctggtcatcggcacgcaccggctc
ttctcgcaggagacgaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgg
ttcggcgtggagcacaaggagcagctgaagaagctgcgggccaacgtcgacgtgctgacc
atgtccgcgacgcccatcccgcgcaccctggagatggcggtgaccggcatccgcgagatg
tcgacgatcaccactccgccggaggagcggcacccggtgctcaccttcgtcggcccgtac
gaggagaagcagatcggcgccgccgtccggcgcgagctgctgcgcgagggccagtgcttc
tacatccacaaccgggtcgagtccatcgaccgggcggccgccaagctgcgcgagatcgtg
cccgaggcgcggatcgcgacggcgcacggccagatgtccgaacaggccctggaacaggtc
gtggtggacttctgggagaagaagttcgacgtgctcgtctcgaccacgatcgtcgagtcc
ggcatcgacatctccaacgccaacaccctgatcgtcgagcgcggcgacaacttcggcctc
tcccagctgcaccagctgcgcggccgcgtcggccgcggccgcgagcgcgggtacgcgtac
ttcctctacccgccggagaagccgctgaccgagaccgcgcacgagcggctcgcgacgatc
gcccagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgc
ggcgcgggcaacctgctcggcggcgagcagtccggccacatcgcgggcgtcggcttcgac
ctgtacatccgcatggtcggcgaggccgtcgccgactaccggtcggccgtcgagggcggg
atcgaggaggagccgccgctggaggtcaagatcgagctgccggtcgacgcgcacgtcccg
cacgactacgcgccgggcgagcggctgcgcctgcaggcctaccggtccatcgcctccgcg
aactcggaggccgacgtcaaggccgtgcgcgaggagctcaccgaccgctacggcaagctg
ccggagccggtggagaacctgctgctggtggccggactgcggatgctggcccgggcctgc
ggggtcggcgacatcaccctccaggggcccaacatccgtttcgggccggtggagctgcgc
gagtcgcaggagctgcggctcaagcggctctacccgggcgcggtgctcaagccggccgcc
tcacaggtcctgatcccgcgccccaagacggcacgggtcggcggcaagccgctggtcggc
cgggaactgctggcctggacgggcgagttcctcaccaccatcctcgggtcctga
DBGET
integrated database retrieval system
