Shinella sumterensis: Q9314_01760
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Entry
Q9314_01760 CDS
T09417
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ssum
Shinella sumterensis
Pathway
ssum03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Q9314_01760 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssum03400
]
Q9314_01760 (mfd)
Enzymes [BR:
ssum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Q9314_01760 (mfd)
DNA repair and recombination proteins [BR:
ssum03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Q9314_01760 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
UB2H
AAA_22
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
WLS08533
UniProt:
A0AA50D692
LinkDB
All DBs
Position
complement(338895..342410)
Genome browser
AA seq
1171 aa
AA seq
DB search
MIPGFSPERIAAADRPLTIGAVPSGVEPLILADLARKSGPLAYVLSDGQRISDLEQMLGF
AAPDIPVLTLPGWDCLPYDRVSPSADVSARRLSALSALIAHQKKPHAAIVLVTVNAMLQK
TAPRAIIESLAFSAKPGQQVRMDDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGS
LEPVRLDFFGDTLESIRSFDPASQRTTGQARSLDLNPMSEVTLTPETISHFRKQYLSSFG
AATRDDALYQAVSEGRRYAGMEHWLPLFYGELETTFDYLAGFRIVTDHTVREAAVERSRL
VRDYYDARLASATPGKGQVAQATPYKPVPPGQLYLDAERFARELDERAAIRLSPFNEHEG
EARQVVAIEARPGQRWARPAGSEDADGGRVNVFDQAVKHIADRRASGAKVLVTGWSEGSL
DRLLQVLAEHGLGNVVPVEKFSDLRKLKPGEAGSAVLSLESGFEAGDVVVIGEQDILGDR
MVRRAKRRKRGADFLTEVAGLDEGSIVVHAEHGIGRFVGLRTIEAAGAPHACLELVYADD
AKLFLPVENIDLLSRYGGEGTDALLDKLGGVAWQARKAKLKKRLLDMAGGLIQIAAARLV
RHAPVLSTPEGVYDEFAARFPYDETDDQANAIDAVRDDLGAGRPMDRLVCGDVGFGKTEV
ALRAAFIAAMNGVQVAVVVPTTLLARQHFKTFSDRFRGLPIRVQQASRLVGSKELALTKK
ELAEGKTDIVVGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSAT
PIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCP
RLSDLSEIHDFLRQDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDV
PTANTMIIHRADMFGLAQLYQLRGRVGRSKVRAFALLTLPVNRTLTGTAERRLKVLQSLD
TLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEIKGDEEVADSGW
SPQISVGTPVMIPDDYVPDLHLRLGLYRRLGEITELADIDAFGAEMIDRFGPLPIEVQHL
LKIVYIKSLCRVANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIAKQGTLAKIRPDQSLF
LSRDYPTPERRLTGAAQVMTQLAGLAKQGAA
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgatccccggcttttctcctgaacgcatcgcggctgccgacaggccgctgacgatcggc
gcggtgccatcgggcgtcgagcctctgattctggccgacctggcgcgcaagtccggaccg
ctcgcctatgtgctgtcggatggccagcgcatttccgatctggagcagatgctggggttt
gcggcgccggacattccggtgctcacgctgcccggctgggactgcctgccctatgaccgc
gtttcgcccagtgcggatgtttccgcccgtcgcctttctgcgctttcggcgctgatcgcc
caccagaagaagccgcatgcggcgatcgtgctcgtcaccgtcaatgccatgttgcagaag
acggcgccgcgcgcgatcatcgaaagcctcgccttctccgccaagcccggtcagcaggtc
cgcatggacgacatcgccgcgcggctggagcgcaacggtttcgaccgtgtcgcgaccgtg
cgcgaggtgggcgaattcgccgttcgcggcggcatcctcgacgttttcgtgcccggcagt
ctggagcccgtgcgcctcgatttcttcggcgatacgctcgaaagcatccgctccttcgat
ccggcgagccagcgcacgacggggcaggcccgctcgctcgacctcaatcccatgagcgaa
gtgacgctgacgccggagacgatttcgcatttccgcaagcagtacctgtcgtccttcggt
gccgccacgcgcgatgatgcgctctaccaggccgtctccgagggccggcgttatgccggc
atggaacactggctgccgctgttctacggcgagctggaaaccaccttcgactatctcgcc
ggcttccgtatcgtcacggaccacaccgtacgtgaggctgccgtcgagcgttcgcgcctc
gtgcgcgattattacgatgcgcgccttgcctccgccacgcccggcaaggggcaggtggcg
caggcgacaccctacaagccggtgccgccgggtcagctctatctcgacgccgaacgcttt
gcccgcgaactcgacgagcgcgccgccattcgcctgtcgcccttcaacgagcatgaaggc
gaggcgcgtcaggtcgtggcgatcgaggcccggcccggccagcgctgggcacgaccggcc
ggcagcgaggatgccgacggcggtcgcgtcaacgtcttcgaccaggctgtcaaacacatc
gccgacaggcgcgcgtccggcgccaaggtgctggtcaccggctggtcggaaggctcgctc
gaccgcctgctacaggtccttgccgaacacggccttggcaatgtcgttccggtcgaaaag
ttttcggatctgcgcaagctgaagccgggcgaggcggggtcggccgttctcagcctggaa
agcggcttcgaagcgggcgacgtcgtcgttatcggcgagcaggatattctgggcgaccgc
atggtgcggcgcgccaagcggcgcaagcgcggcgcggatttcctcaccgaggttgccggc
ctcgacgaaggctcgatcgtcgtgcatgccgagcatggcatcggccggttcgtgggtctt
cgcaccatcgaggccgccggcgcgccgcatgcctgtctcgaactggtctatgccgacgac
gcgaaactcttcctgcccgtcgaaaacatcgatctcctgtcgcgctatggcggcgagggt
accgatgcgctgctcgacaagcttggcggtgtcgcctggcaggcgcgcaaggccaagctc
aagaagcgcctgctcgacatggccggcgggctcatccagatcgccgccgcgcgcctcgtg
cgccatgcgccggtgctgagcacgccggaaggtgtctatgacgagttcgccgcacgcttc
ccctatgacgagaccgacgatcaggcgaacgccatcgatgccgttcgcgacgatctgggc
gccggccgtcccatggatcgcctcgtctgcggcgacgtcggcttcggcaagaccgaagtg
gcactgcgcgcagccttcatcgcggccatgaacggtgtgcaggtcgccgtcgtcgtcccg
acgacgctgctcgcccgccagcacttcaagaccttctccgatcgcttccgcggcctgcct
atccgcgtacagcaggcttcgcgcctcgtcggctccaaggaactggcgctgaccaagaag
gaactggccgagggcaagacggatatcgtcgtcggcacccatgcgctgctcggctcgtcg
atcaagttcgccaatctcggcctgctgatcatcgacgaggagcagcatttcggcgtgaag
cacaaggaacggctgaaggagctgaagagcgacgtgcatgtgctgacgctctccgccacg
ccgatcccgcgcaccctgcagcttgccatgacgggtgtgcgcgagctttcgctcatcacc
acgccgccggtcgaccgcatggccgtgcgcaccttcatatcgcccttcgacccgctcgtc
atccgcgagacgctgatgcgtgagcattaccgcggcggccagagtttttacgtctgcccg
cgcctgagcgacctttcggagatccacgatttcctgcgccaggacgtgccggagctgaag
gtcgcggtcgcccatggccagatgccggccaccgagctggaagacatcatgaacgccttc
tacgaaggccgctacgatgtgctgctctcaaccaccatcgtcgagtcgggcctcgacgtg
ccgacggcgaacacgatgatcatccatcgcgccgacatgttcggcctcgcccagctctac
cagctgcgcggtcgtgtcggacgttccaaggtgcgcgccttcgctctgctcacgctgccg
gtcaaccgcacgctcacggggacggcggaacgccgcctcaaggtgcttcaatcgctggat
acgctcggcgcaggcttccagctggccagccacgacctcgatatccgtggcgccggaaac
ctgctcggcgaggagcagtccggccatatcaaggaagtcggcttcgaactgtaccagcag
atgctggaggaggcggtcgcagagatcaagggcgacgaagaggtcgccgatagtggctgg
tcaccgcagatctccgtcggcacccccgtcatgatcccggacgattacgtgccggacctg
catctgcgcctcggcctgtatcgtcgcctcggcgagatcaccgagcttgccgatatcgat
gccttcggtgcggaaatgatcgaccgtttcggtcctctgcccatcgaggtccagcacctt
ctgaagatcgtctacatcaagtcgctgtgccgcgtggcgaatgtcgaaaagctcgatgcg
gggccgaagggcgtcgtcgtccagttccgcaacaaggagttcccgaacccggccgcactt
gtcggctatatcgccaagcagggcacgcttgcgaagatcaggccggaccagagcctcttc
ctgtcgcgcgattatccgactccggaacggcgcctcacgggcgccgcacaggtcatgacg
caattggccggcctcgccaaacagggtgcggcctga
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