KEGG   Shinella sumterensis: Q9314_20970
Entry
Q9314_20970       CDS       T09417                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ssum  Shinella sumterensis
Pathway
ssum03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ssum00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    Q9314_20970 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ssum03400]
    Q9314_20970 (ligD)
Enzymes [BR:ssum01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Q9314_20970 (ligD)
DNA repair and recombination proteins [BR:ssum03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     Q9314_20970 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: WLS11728
UniProt: A0AA50DCD3
LinkDB
Position
unnamed1:431119..433554
AA seq 811 aa
MATLDVYRQKRDFKTTSEPRGRRARTGGNSFVIQKHDATRLHYDFRLEMDGVLKSWAVTK
GPSLVPSEKRLAVHVEDHPLDYGDFEGTIPKGEYGGGTVIVWDRGTWEPIGDVRKAYAKG
HLEFTLDGEKLHGRWHLVRMHGKPAEKRENWLLIKGDDEFAMPEGQDDLLEERPESVKTG
REIADVAGEEPGWSSKTGRIRKPSRAKTQKKTAKREDTAEPAPDPSDIKGARKATLPDFL
PPTLATLAGAPPAGERWLHEIKFDGYRLQARIEAGRVKLLTRSGLDWTKKFGKAVPDALR
DLPVGTAILDGELVVETGAGASDFSALQADLSAGRDDRFTFYLFDLLYLDGYDLTRLPLE
QRKSLLEKLVMGTEGPLRYSGHFDENGALVLRHACRLSLEGVVSKLRDAPYRAGRSKGWI
KSKCSARQEFVIGGYVPSTVSRKAIGSLVLGVYKKGKLEPVGRVGTGFSALVAEDIFKRL
SRLRTEESPFGRKLTAEEARQARYVRPELVAEVEFRAWTADGHLRHASFRGLREDKPAQE
VVAEMPKSTKAKAEKAPKPQRRTVRLTHPDRVYWPAEGVTKEGLADYYTEVWRYIAPHIV
GRPLALLRAPSGIDGQTFFQKHVWKGINANILQVQDPAEKDDEPYVAINDLDGLMGLVQA
AVLEIHPWGSTLADWERPDRIIMDLDPGEGVDWQAVIDAAEETRKRLEAAGLNAFVKTSG
GKGLHVCAPLKPSARWPAVKAFCKGIADAMAKDSPGKYVSTITKSKRRGKILIDYLRNQR
GMTAVAPYSTRARPGAAVSMPLAWEELSPLS
NT seq 2436 nt   +upstreamnt  +downstreamnt
atggcgacgctggatgtctatcggcagaagcgggatttcaagaccacgtcggagccgcgc
ggcaggagggcgcggacgggcggcaacagctttgtcatccagaagcacgacgccacacgg
ctgcactatgattttcgcctcgaaatggacggcgtgctgaagagctgggcggtgacgaag
ggtcctagcctggtcccgagcgaaaaacgacttgccgtgcatgtggaggatcatcctctc
gactacggcgactttgaagggaccattcccaagggtgaatatggcggcggcaccgtcatc
gtctgggatcgtggcacatgggagccgatcggcgacgtgcgaaaagcctatgcaaaggga
catctcgaattcacgctcgatggtgaaaagctgcacgggcgctggcatctcgtgcgcatg
cacggcaaacccgccgagaagcgcgaaaactggttgctgatcaagggcgatgacgaattc
gccatgcctgaaggccaggacgacctgctcgaggagcggcctgaatcggtgaaaacggga
cgcgagatcgcggatgtcgccggagaggagcccgggtggtcgtcgaagaccgggcgtatc
cggaagccatcgagagcgaaaacgcaaaaaaagaccgcgaagcgggaggacacggccgag
cctgcgccggacccatccgatatcaagggcgcgcgcaaggcgacactgccggatttcctg
ccgccgacgctggcaacgcttgccggcgcgccgccggccggcgagcgatggctgcatgag
atcaagttcgacggatatcgccttcaggcccgcatcgaggcgggccgggtcaagctgctc
acccgcagcggcctcgactggacgaagaaattcggcaaggccgtaccggatgccctgcgg
gacctgcctgtcggtacggccatcctggatggcgaacttgtcgtcgagaccggcgccggc
gcatccgatttttccgctttgcaagccgatctcagcgcgggccgcgacgatcgtttcacc
ttctatcttttcgatcttctctatctcgacgggtacgacctgacccgtctgccgcttgag
caacgcaaaagcctgctcgaaaagctcgtcatgggaacagaaggacctttgcgctacagc
ggccatttcgacgagaatggcgcgctcgttctacgccacgcgtgccgcctcagtctggag
ggcgtggtatcgaagctgcgcgatgcgccctatcgggccggccgcagcaagggctggatc
aaatcgaaatgctcggcccgacaggagttcgtcatcggcggctacgtgccgtccaccgtc
tcccgcaaggcgatcgggtctttggtgctcggcgtctacaagaagggtaagctggagccg
gtcggtcgtgtcggcacggggttttccgcactcgtcgcggaggatatcttcaagcgtctc
tcgcgcttgcggacggaggaaagcccgttcggacgaaagctgacggcggaggaggcgcgc
caggcccgctatgtgcggcccgagctggtggcggaggtggaattccgggcctggacggcc
gatggccaccttcggcacgcatccttccgcggtctgagggaagacaagcccgcacaggag
gtcgttgccgagatgcccaagtcgacgaaagccaaggcggagaaagcgccaaagccgcag
cgccgtaccgtgcgcctcacgcatccggaccgggtctactggccggcagaaggcgtcaca
aaggaagggctcgcggattattataccgaggtctggcgctatatcgcgccgcatatcgtc
ggccgcccgctcgcgctcctgcgcgcgccgagcggcatcgatgggcagaccttcttccag
aaacatgtctggaagggcatcaatgcgaacattctccaggtacaggaccccgcggaaaag
gacgacgagccctatgtcgccatcaacgatctcgacggcctgatgggtctcgttcaggct
gcggtgcttgaaatccacccttggggctcgacgctcgccgactgggagcgacccgaccgc
atcattatggatctcgatcccggtgaaggcgtcgactggcaggctgtcatcgacgctgca
gaggagacgcgaaagcgcctcgaagcggccgggttgaatgccttcgtcaaaacctccggc
ggcaagggtctgcatgtctgcgcaccgctcaagccgtctgcgcgctggccggccgtcaag
gcattctgcaagggcatcgccgatgccatggcaaaggacagccccggcaaatatgtctcg
accatcaccaagtcgaagcgccgcggaaaaatcctgatcgactacctgcgcaaccagcgc
ggcatgacggcggtcgcgccatactcgacccgagcccggcccggtgccgccgtttccatg
ccgctggcctgggaggaactcagccccttatcttga

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