Shinella sumterensis: Q9314_20970
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Entry
Q9314_20970 CDS
T09417
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ssum
Shinella sumterensis
Pathway
ssum03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ssum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Q9314_20970 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssum03400
]
Q9314_20970 (ligD)
Enzymes [BR:
ssum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Q9314_20970 (ligD)
DNA repair and recombination proteins [BR:
ssum03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Q9314_20970 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WLS11728
UniProt:
A0AA50DCD3
LinkDB
All DBs
Position
unnamed1:431119..433554
Genome browser
AA seq
811 aa
AA seq
DB search
MATLDVYRQKRDFKTTSEPRGRRARTGGNSFVIQKHDATRLHYDFRLEMDGVLKSWAVTK
GPSLVPSEKRLAVHVEDHPLDYGDFEGTIPKGEYGGGTVIVWDRGTWEPIGDVRKAYAKG
HLEFTLDGEKLHGRWHLVRMHGKPAEKRENWLLIKGDDEFAMPEGQDDLLEERPESVKTG
REIADVAGEEPGWSSKTGRIRKPSRAKTQKKTAKREDTAEPAPDPSDIKGARKATLPDFL
PPTLATLAGAPPAGERWLHEIKFDGYRLQARIEAGRVKLLTRSGLDWTKKFGKAVPDALR
DLPVGTAILDGELVVETGAGASDFSALQADLSAGRDDRFTFYLFDLLYLDGYDLTRLPLE
QRKSLLEKLVMGTEGPLRYSGHFDENGALVLRHACRLSLEGVVSKLRDAPYRAGRSKGWI
KSKCSARQEFVIGGYVPSTVSRKAIGSLVLGVYKKGKLEPVGRVGTGFSALVAEDIFKRL
SRLRTEESPFGRKLTAEEARQARYVRPELVAEVEFRAWTADGHLRHASFRGLREDKPAQE
VVAEMPKSTKAKAEKAPKPQRRTVRLTHPDRVYWPAEGVTKEGLADYYTEVWRYIAPHIV
GRPLALLRAPSGIDGQTFFQKHVWKGINANILQVQDPAEKDDEPYVAINDLDGLMGLVQA
AVLEIHPWGSTLADWERPDRIIMDLDPGEGVDWQAVIDAAEETRKRLEAAGLNAFVKTSG
GKGLHVCAPLKPSARWPAVKAFCKGIADAMAKDSPGKYVSTITKSKRRGKILIDYLRNQR
GMTAVAPYSTRARPGAAVSMPLAWEELSPLS
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgctggatgtctatcggcagaagcgggatttcaagaccacgtcggagccgcgc
ggcaggagggcgcggacgggcggcaacagctttgtcatccagaagcacgacgccacacgg
ctgcactatgattttcgcctcgaaatggacggcgtgctgaagagctgggcggtgacgaag
ggtcctagcctggtcccgagcgaaaaacgacttgccgtgcatgtggaggatcatcctctc
gactacggcgactttgaagggaccattcccaagggtgaatatggcggcggcaccgtcatc
gtctgggatcgtggcacatgggagccgatcggcgacgtgcgaaaagcctatgcaaaggga
catctcgaattcacgctcgatggtgaaaagctgcacgggcgctggcatctcgtgcgcatg
cacggcaaacccgccgagaagcgcgaaaactggttgctgatcaagggcgatgacgaattc
gccatgcctgaaggccaggacgacctgctcgaggagcggcctgaatcggtgaaaacggga
cgcgagatcgcggatgtcgccggagaggagcccgggtggtcgtcgaagaccgggcgtatc
cggaagccatcgagagcgaaaacgcaaaaaaagaccgcgaagcgggaggacacggccgag
cctgcgccggacccatccgatatcaagggcgcgcgcaaggcgacactgccggatttcctg
ccgccgacgctggcaacgcttgccggcgcgccgccggccggcgagcgatggctgcatgag
atcaagttcgacggatatcgccttcaggcccgcatcgaggcgggccgggtcaagctgctc
acccgcagcggcctcgactggacgaagaaattcggcaaggccgtaccggatgccctgcgg
gacctgcctgtcggtacggccatcctggatggcgaacttgtcgtcgagaccggcgccggc
gcatccgatttttccgctttgcaagccgatctcagcgcgggccgcgacgatcgtttcacc
ttctatcttttcgatcttctctatctcgacgggtacgacctgacccgtctgccgcttgag
caacgcaaaagcctgctcgaaaagctcgtcatgggaacagaaggacctttgcgctacagc
ggccatttcgacgagaatggcgcgctcgttctacgccacgcgtgccgcctcagtctggag
ggcgtggtatcgaagctgcgcgatgcgccctatcgggccggccgcagcaagggctggatc
aaatcgaaatgctcggcccgacaggagttcgtcatcggcggctacgtgccgtccaccgtc
tcccgcaaggcgatcgggtctttggtgctcggcgtctacaagaagggtaagctggagccg
gtcggtcgtgtcggcacggggttttccgcactcgtcgcggaggatatcttcaagcgtctc
tcgcgcttgcggacggaggaaagcccgttcggacgaaagctgacggcggaggaggcgcgc
caggcccgctatgtgcggcccgagctggtggcggaggtggaattccgggcctggacggcc
gatggccaccttcggcacgcatccttccgcggtctgagggaagacaagcccgcacaggag
gtcgttgccgagatgcccaagtcgacgaaagccaaggcggagaaagcgccaaagccgcag
cgccgtaccgtgcgcctcacgcatccggaccgggtctactggccggcagaaggcgtcaca
aaggaagggctcgcggattattataccgaggtctggcgctatatcgcgccgcatatcgtc
ggccgcccgctcgcgctcctgcgcgcgccgagcggcatcgatgggcagaccttcttccag
aaacatgtctggaagggcatcaatgcgaacattctccaggtacaggaccccgcggaaaag
gacgacgagccctatgtcgccatcaacgatctcgacggcctgatgggtctcgttcaggct
gcggtgcttgaaatccacccttggggctcgacgctcgccgactgggagcgacccgaccgc
atcattatggatctcgatcccggtgaaggcgtcgactggcaggctgtcatcgacgctgca
gaggagacgcgaaagcgcctcgaagcggccgggttgaatgccttcgtcaaaacctccggc
ggcaagggtctgcatgtctgcgcaccgctcaagccgtctgcgcgctggccggccgtcaag
gcattctgcaagggcatcgccgatgccatggcaaaggacagccccggcaaatatgtctcg
accatcaccaagtcgaagcgccgcggaaaaatcctgatcgactacctgcgcaaccagcgc
ggcatgacggcggtcgcgccatactcgacccgagcccggcccggtgccgccgtttccatg
ccgctggcctgggaggaactcagccccttatcttga
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