Saccharothrix syringae: EKG83_03500
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Entry
EKG83_03500 CDS
T06258
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ssyi
Saccharothrix syringae
Pathway
ssyi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ssyi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EKG83_03500 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ssyi03400
]
EKG83_03500 (mfd)
Enzymes [BR:
ssyi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EKG83_03500 (mfd)
DNA repair and recombination proteins [BR:
ssyi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EKG83_03500 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
MFD_D3
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QFZ24003
UniProt:
A0A5Q0HDV5
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All DBs
Position
736370..739918
Genome browser
AA seq
1182 aa
AA seq
DB search
MSGLLTAVLPDKALRALVDSVGVPGLELEGPPAARPLVAAALASSTPVLAVTATGREAEE
LRDVLCDLIGPGQVALFPSWETLPHERLSPRADTVGARLQVLRRLAHPGDDPLRVVVTTV
RSLIQPMAPGLGELAPVDLAVGAEHDFEQLLTDLADLAYTRVDMVEKRGEFAVRGGILDV
FPPTAEHPLRVEFWGDEVSEIRPFSVADQRSLPHEVASFTAPPCRELLLTDQVRARAAEL
AAAHEADAQLHEMLEKLANGIASEGMEALIPALCEGRLQLLTDVVPEGTHVVLNDPEKIR
ARAHDLVRTGQEFLEASWMAAAGGGKAPIDLGASAYRGLDEVAGAARAAGRPWWTLSRLT
TEGADVLRMEFKHVEAYQGDVERAFADLRAHTASGGTAVLVVPGAGTAQRATEQLREAEV
DATCADALTEAPRPGTVTVVRGALEDGFALPELALVVLTETDLTGGRGGTSTKDMRRMPS
RRRNAVDPLALKAGDFVVHEQHGIGKYVEMVQRTVAGATREYLVLEYASSKRGQPGDRLF
VPTDQLDEVSRYVGGELPTLNRLGGSDWKNTKAKAKKAVKQIAAELVQLYAARQSAPGHP
FGPDTPWQRELEDAFPFTETADQMAAIDEVKADMERGVPMDRVICGDVGYGKTEIAVRAA
FKAVQDGKQVVVLVPTTLLAQQHLNTFTERMRAFPVKIRGLSRFTDPTEAEQTVAGLADG
EVDIVIGTHRLLQKGLRYKDLGLVVVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRT
LEMSLAGIREMSTILTPPEERHPILTYVGPYDDKQVGAAIRRELLRDGQVFYVHNRVSSI
EKAARRIRELVPEARVVTAHGQMNEDKLEKIIQGFWEREYDVLVCTTIVETGLDISNANT
LIVERGDMLGLSQLHQLRGRVGRGRERGYAYFLYPPEAPLTETAHDRLATIAQNTELGAG
MAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVEAFRRHAGAGTDAEEELAE
VRVDLPVDAHIPHEYVPGERLRLEAYRKIAAAGDEAALEAVRDELRDRYGTPPLPVDRLL
AVARFRQRCREHGVTEVAMMGQNIRFAPMDLKDSQLVRLRRLFPKAVHKQATSTVTVPRP
TEGAAGGRMGAPQLRDQELLDWCAHFLDSLVVSPVTGTSSRS
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
ctgtccggcctgctgaccgccgtcctgcccgacaaggcgctgcgcgccctcgtcgactcc
gtcggcgtgcccggactggagctggagggcccgcccgcggcccggccgctggtcgccgcg
gccctggcgagcagcaccccggtgctggcggtcaccgccaccggccgcgaggccgaggag
ctgcgcgacgtcctgtgcgacctgatcggccccggccaggtcgcgctgttcccgtcctgg
gagacgctgccgcacgagcgcctgtcgccgcgcgcggacaccgtcggcgcccgcctgcag
gtcctgcgccggctggcccaccccggcgacgacccgctgcgcgtcgtggtcaccaccgtc
cgcagcctgatccagccgatggcacccggcctgggcgagctggcgcccgtcgacctggcg
gtcggcgccgagcacgacttcgagcagctgctcaccgacctggccgacctggcctacacc
cgcgtggacatggtcgagaagcgcggcgagttcgccgtgcgcggcggcatcctggacgtg
ttcccgccgaccgccgagcacccgctgcgggtggagttctggggcgacgaggtcagcgag
atccgcccgttctccgtcgccgaccagcgctccctgccgcacgaggtcgcctccttcacc
gcgccgccgtgccgggagctgctgctcaccgaccaggtcagggcgcgggcggccgagctg
gccgcggcgcacgaggccgacgcccagctgcacgagatgctggagaagctggccaacggc
atcgcgtcggagggcatggaggccctgatcccggccctgtgcgaggggcggctgcaactg
ctcaccgacgtggtgcccgagggcacgcacgtggtgctcaacgacccggagaagatccgc
gcccgcgcccacgacctggtgcgcaccggccaggagttcctggaggcgtcctggatggcc
gcggccggcggcggcaaggcgcccatcgacctcggcgcctcggcctaccggggcctggac
gaggtcgcgggggccgcgcgggcggccggccggccgtggtggacgctgagccggctcacc
accgagggcgccgacgtgctgcggatggagttcaagcacgtcgaggcgtaccagggcgac
gtcgagcgggcgttcgccgacctgcgcgcgcacaccgcgtccggcggcacggccgtgctc
gtcgtgcccggcgcgggcaccgcccagcgcgccaccgagcagctgcgcgaggccgaggtc
gacgccacctgcgcggacgccctcaccgaggcgccgcggccgggcaccgtcaccgtggtc
cggggcgcgctggaggacgggttcgcgctgcccgagctggccctggtcgtgctcaccgag
accgacctgaccggcgggcgcggcggcacgtcgaccaaggacatgcgccgcatgcccagc
cgccgccgcaacgcggtggacccgctggcgctcaaggcaggcgacttcgtggtgcacgag
cagcacggcatcggcaagtacgtggagatggtgcagcgcacggtcgccggcgcgacccgc
gagtacctggtgctggagtacgcctcgtccaagcgcggccagcccggcgaccggctgttc
gtgcccaccgaccagctcgacgaggtgtcccgctacgtcggcggcgagctgcccacgctc
aacaggctcggcggcagcgactggaagaacaccaaggccaaggcgaagaaggcggtcaag
cagatcgccgccgagctggtgcagctctacgccgcccgccagtccgcgcccggccacccg
ttcgggcccgacacgccgtggcagcgggagctggaggacgcgttcccgttcaccgagacc
gcggaccagatggccgcgatcgacgaggtcaaggccgacatggagcgcggcgtcccgatg
gaccgggtgatctgcggcgacgtcggctacggcaagaccgagatcgcggtgcgcgcggcg
ttcaaggccgtgcaggacggcaagcaggtggtggtgctggtgcccaccacgctgctggcc
cagcagcacctgaacacgttcaccgagcgcatgcgggcgttcccggtcaagatcaggggc
ctgtcgcggttcaccgacccgacggaggccgagcagaccgtcgcgggcctggccgacggc
gaggtcgacatcgtcatcggcacccaccgcctgctccagaagggcctgcgctacaaggac
ctgggcctggtcgtcgtggacgaggagcagcggttcggcgtcgagcacaaggagcacatc
aaggcgctgcgcacgcacgtggacgtgctcaccatgtccgccacgccgatcccgcgcacc
ctggagatgtcgctggcgggcatccgcgagatgtccaccatcctcaccccgcccgaggag
cggcacccgatcctgacctacgtcggcccgtacgacgacaagcaggtcggcgccgcgatc
cgccgcgagctgctgcgcgacggccaggtgttctacgtgcacaaccgggtgtcgtcgatc
gagaaggccgcccgccgcatccgcgagctggtgcccgaggcccgcgtggtcaccgcgcac
ggccagatgaacgaggacaagctggagaagatcatccagggcttctgggagcgcgagtac
gacgtgctcgtgtgcaccacgatcgtggagaccggcctggacatctccaacgccaacacc
ctgatcgtggagcgcggcgacatgctgggcctgtcccagctgcaccagctccgcgggcgc
gtcggccgcggccgggagcgcggctacgcctacttcctgtacccgcccgaggcgccgctg
accgagaccgcgcacgaccggctggccaccatcgcgcagaacaccgagctgggcgcgggc
atggccgtggccatgaaggacctggagatccgcggcgcgggcaacatcctgggcgccgag
cagtccgggcacatcgccggcgtcggcttcgacctgtacgtgcggctggtcggcgaggcc
gtggaggcgttccggcggcacgcgggcgcgggcacggacgcggaggaggagctggccgag
gtccgggtcgacctgccggtcgacgcgcacatcccgcacgagtacgtgccgggcgagcgg
ctgcggctggaggcgtaccgcaagatcgcggcggcgggcgacgaggcggcgctggaggcg
gtgcgcgacgagctcagggaccgctacggcaccccgccgctgccggtggaccggctgctg
gccgtggcccggttccggcagcggtgccgggagcacggcgtgaccgaggtcgcgatgatg
gggcagaacatccggttcgcgccgatggacctcaaggacagccagctggtgcggctgcgg
cggctgttccccaaggcggtccacaagcaggcgacgtccaccgtcaccgtgcccaggccg
accgagggcgcggcgggcggccggatgggcgcaccgcagctgcgcgaccaggaactgctc
gactggtgcgcgcacttcctcgactccctggtggtgagccccgtcacggggacttcatcg
cggtcgtga
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